barSeed - Barley Seed Development Database

Probe CUST_25352_PI390587928

Source Contig U35_38352

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25352_PI390587928	Hv_44K_v2	TATCTTTTCTTAAAGACACCTATGCCAATGGTGGTATGGAAAGCAAGGTCGTAGCTGGTA	665	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363795	3787	2e-24	3141 - 3200	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.2	3298	2e-24	2591 - 2650	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.5	3532	2e-24	2848 - 2907	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.3	3709	2e-24	3003 - 3062	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.4	3673	2e-24	2967 - 3026	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.1	3233	2e-24	2540 - 2599	100	60 / 60	plus	ABC17486
JLOC1	JLOC1_51697.3	3504	8e-25	2674 - 2733	100	60 / 60	plus
JLOC1	JLOC1_51697.2	3642	8e-25	2812 - 2871	100	60 / 60	plus
JLOC1	JLOC1_51697.1	3390	8e-25	2560 - 2619	100	60 / 60	plus
Harvest21	ABC34289	729	3e-25	666 - 725	100	60 / 60	plus
Harvest35	U35_38352	729	3e-25	666 - 725	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_38352 729 Hv_44K_v2
TCTCCTGTCACCCTGGAGCAACATCTGGAGACTGTCAGAAAACCTTTTGCCAATCTTGTC
GAAGATCTAGGGTCTTCAACACGAAACCCGTCCAGCTCTAGAGGAATTGTCAGAAGCAGG
AGCTGTAGGTCTCTGATGGGTTCTACTCTCCTTGAAGACCTGGAGAAGGAGGATTGCACA
CCACCAAGCAGAAGATTCATGGACTTCCCCGGGAGACCTGAAGGGGGTCAAAGAAGGGGC
TCTGCGCTGAACTTTGATGCAGAGAGTGAAACTCTGTCACGGGCAGGGTCAATGCTTTCT
GAAATCACTACTACGAGGGGTGGACCCAAGGCAAACGGTTCTATTGCAGGTGACACGGAA
TTTACTGGCATAGGTGAATTTGTTGCTGAACTGAAAGAAATGGCTCAGTATCAGAAGCAA
CTCGGTGGTCAGTATGTTAATGGAGAAATAGCAGAAGGAACCGTCAGGAGCGTTGGACTA
GATCCGATCATGGATGCCTTGCAATCACCTTCGCGATGGCCACTGGAATTCGAGAGAAAA
CAGCAAGAGATCATTGACCTTTGGCATGCATGCTATGCTTCACTGGTTCATAGAACCTAC
TTTTTCTTGTTGTTTAAAGGAGATCCAGCCGACTCCATTTTACATGGAAGTGGAGATAAG
GAGGCTATCTTTTCTTAAAGACACCTATGCCAATGGTGGTATGGAAAGCAAGGTCGTAGC
TGGTAGCCT

Homology of Contig U35_38352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45580.1	946	9e-113	protein\|kinesin motor domain containing protein, expressed
Brachypodium v1_2	Bradi5g17020.2	941	1e-128
Arabidopsis v10	None