barSeed - Barley Seed Development Database

Probe CUST_2533_PI390587928

Source Contig U35_14281

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2533_PI390587928	Hv_44K_v2	GCTGGGACTTGGTGATTTGTAAAATATGAACCAATGGTGACTCAATGCATCCACTTGTAC	1141	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.507	5.648	1.336	0.757	0.235	0.376
Raw	4081.263	5868.861	1139.479	1093.185	109.114	195.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65066.1	1663	2e-24	263 - 322	100	60 / 60	minus	ABC01888 ABC31751
MLOC	MLOC_65066.3	1561	2e-24	14 - 73	100	60 / 60	minus	ABC01888 ABC31751
MLOC	MLOC_65066.2	1501	3e-22	127 - 182	100	56 / 56	minus	ABC01888 ABC31751
JLOC1	JLOC1_42787.1	1902	8e-25	1271 - 1330	100	60 / 60	plus
Harvest21	ABC01888	1275	3e-25	1140 - 1199	100	60 / 60	plus	ABC01888
Harvest35	U35_14281	1265	3e-25	1142 - 1201	100	60 / 60	plus

Contig Sequence (1265 bp)

>U35_14281 1265 Hv_44K_v2
TCCCCGCGGTGGCGGCCGTCTAACTATGGTCCCCCGCACACACCACATAGCACCAGCCGC
CACCCCAACGCACGCAAAGGCCGAGGAGGACAAAGCTAGGAGGAGCGAGTGAGCAGCCAT
GGCTTCGTCGGTGGCCGCCGCGGCGAGCACGTTCCTCGGGACCCGGCTGGCGGACCCGGC
GCCGCAGAACGGGCGCATCGTGGCGCGGTTCGGCTTCGGCAAGAAGAAGGCCCCGCCGAA
GAAGGCCAAGGCGCCCCCGACCACCGACCGGCCGCTGTGGTTCCCCGGCGCGCAGGCGCC
CGAGTACCTCGACGGCACGCTCGTCGGCGACTACGGCTTCGACCCCTTCGGCCTCGGGAA
GCCCGCGGAGTACCTGCAGTACGACGTGGACTCCCTGGACCAGAACCTTGCCCAGAACCT
GGCGGGTGAGATCATCGGCACCCGGTTCGAGGACGCCGACGTCAAGTCCACCCCGTTCCA
GCCCTACGCGGAGGTGTTCGGCCTCCAGAGGTTCCGCGAGTGCGAGCTCATCCACGGCCG
CTGGGCCATGCTCGCCACCCTCGGCGCCCTCACCGTCGAGTGGCTCACCGGCGTCACCTG
GCAGGACGCCGGCAAGGTGGAGCTGGTGGACGGGTCGTCGTACCTGGGTCAGCCGCTGCC
GTTCACGATCACCACGCTCATCTGGATCGAGGTGCTGGTGATCGGGTACATCGAGTTCCA
GCGCAACGCGGAGCTGGACCCGGAGAGGAGGCTCTACCCCGGAGGCTCCTACTTCGACCC
GCTGGGACTCGCGGCGGACCCGGAGAAGAAGGAGACTCTGCAGCTGGCGGAGATCAAGCA
CGCCCGCCTCGCCATGGTCGCCTTCCTCGGCTTCGCCGTGCAGGCCGCCGCCACCGGCAA
GGGTCCGCTCAACAACTGGGCCACCCACCTCAGCGACCCGCTGCACACCACCATCTTCGA
CACCTTCGGCTCCTCTTAAGTGGTCGGTGGTCGAGCAGTTTCTGTCAGCTCAGCTGCAAA
ATGGACGAACGCGCGTCCGTGTAACGAACGTGCTTTGGTTTTGTATGACGAGTGATGGAT
GAGAGGGTATCGCAAAGATCCTTTGTTGATTATAATGCTGGTCCGATCACATAGGAGAGC
TGCTGGGACTTGGTGATTTGTAAAATATGAACCAATGGTGACTCAATGCATCCACTTGTA
CATAAAAAAAAAAAAAAAAAATCAATCTTGAGCTGATTTTTTGTGTTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_14281 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37240.1	291	3e-174	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g24870.1	289	0.0
Arabidopsis v10	AT5G01530.1	290	4e-158	\| Symbols: LHCB4.1 \| light harvesting complex photosystem II \| chr5:209084-210243 FORWARD LENGTH=290