barSeed - Barley Seed Development Database

Probe CUST_25338_PI390587928

Source Contig U35_26383

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25338_PI390587928	Hv_44K_v2	CGGAAGTTGTTTGATGCCACCTACACAGGCTTGATCCATAAAGTTTTTGTTCTACTGAAA	556	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.128	2.529	1.326	0.684	0.169	0.225
Raw	292.211	532.744	247.952	202.802	17.578	24.324

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372751	4785	6e-24	4710 - 4768	100	59 / 59	plus	ABC26498
MLOC	MLOC_57064.11	3791	2e-23	537 - 594	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.1	7743	2e-23	2741 - 2798	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.3	6694	2e-23	1906 - 1963	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.4	6779	2e-23	1864 - 1921	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.5	6955	2e-23	1970 - 2027	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.6	6769	2e-23	1864 - 1921	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.10	5026	2e-23	654 - 711	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.7	5898	2e-23	1587 - 1644	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.8	4313	2e-23	1587 - 1644	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.12	2866	2e-23	435 - 492	100	58 / 58	minus	ABC26498
MLOC	MLOC_57064.2	4886	2e-23	2131 - 2188	100	58 / 58	minus	ABC26498
JLOC1	JLOC1_36934.16	4889	1e-23	4616 - 4673	100	58 / 58	plus
JLOC1	JLOC1_36934.15	4877	1e-23	4604 - 4661	100	58 / 58	plus
JLOC1	JLOC1_36934.14	4571	1e-23	4298 - 4355	100	58 / 58	plus
JLOC1	JLOC1_36934.13	4475	1e-23	4202 - 4259	100	58 / 58	plus
JLOC1	JLOC1_36934.12	2699	1e-23	2426 - 2483	100	58 / 58	plus
JLOC1	JLOC1_36934.11	2688	1e-23	2415 - 2472	100	58 / 58	plus
JLOC1	JLOC1_36934.10	2657	1e-23	2384 - 2441	100	58 / 58	plus
JLOC1	JLOC1_36934.9	4278	1e-23	4005 - 4062	100	58 / 58	plus
JLOC1	JLOC1_36934.8	2825	1e-23	2552 - 2609	100	58 / 58	plus
JLOC1	JLOC1_36934.7	4016	1e-23	3743 - 3800	100	58 / 58	plus
JLOC1	JLOC1_36934.6	2944	1e-23	2554 - 2611	100	58 / 58	plus
JLOC1	JLOC1_36934.5	4270	1e-23	3880 - 3937	100	58 / 58	plus
JLOC1	JLOC1_36934.4	4174	1e-23	3784 - 3841	100	58 / 58	plus
JLOC1	JLOC1_36934.3	5294	1e-23	4743 - 4800	100	58 / 58	plus
JLOC1	JLOC1_36934.2	5443	1e-23	4753 - 4810	100	58 / 58	plus
JLOC1	JLOC1_36934.1	4786	1e-23	4096 - 4153	100	58 / 58	plus
Harvest21	ABC26498	629	3e-25	557 - 616	100	60 / 60	plus	ABC26498
Harvest35	U35_26383	629	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_26383 629 Hv_44K_v2
GCACGAGGGGAACATTTGGCTACATGGCCCCTGAGTATGCAATGCAAGGTATCATCTCTA
CCAAATCCGACATCTATAGTTTTGGCGTGTTACTACTGGAGATCGTAACTGGTATGAAGA
GAAGCTCCACTAGTCCACCAAGGGGCTTTCCGAGCCTCATAATCTATTCGTGGAATATGT
GGAAAGATGGGAAGGCAGAGGAATTGGCTGACTCATCTATTATAGATACATGCCTACTAG
ATGAGGTGTTGCTTTGCATTCATGTAGCACTCTTGTGTGTCCAAGAAAACCCAAAAGACA
GACCGCACATGTCATCGGTTGTGTTCACCCTAGAGAATGGAAGCACTACACTCCCAATTC
CCAGTCGGCCTGCATACTTTCTGGGACAGAGCACTGAATTGGAGCAACTCAGAAACAATA
TCCAGAATTCCGTGAATACTTTAACTCTTACTGGTATAGAGGGTCGATGAAATACTTCAT
TACTTTTATATGTGTTGGACATTGTGTAAAGGAAGGCTTGTCCACGGGTGGTCGTTGTTT
GTAGCTTAGTGGTGGACGGAAGTTGTTTGATGCCACCTACACAGGCTTGATCCATAAAGT
TTTTGTTCTACTGAAAAAAAAAAAAAAAA

Homology of Contig U35_26383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37890.1	775	1e-70	protein\|serine/threonine-protein kinase receptor precursor, putative, expressed
Brachypodium v1_2	Bradi4g15270.1	710	2e-64
Arabidopsis v10	None