barSeed - Barley Seed Development Database

Probe CUST_2532_PI390587928

Source Contig U35_14282

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2532_PI390587928	Hv_44K_v2	CTTGTTTGATATCATTGTTTTCTAACGCTGCAGGGGTTGCTTGCATTAGCCACAACTAAA	1217	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.885	1.446	1.918	1.555	0.616	0.521
Raw	864.640	2260.340	2542.163	3208.472	450.730	414.661

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61726.3	1389	2e-23	185 - 242	100	58 / 58	minus	ABC01889 ABC01890 ABC48775
MLOC	MLOC_61726.1	1597	2e-23	501 - 558	100	58 / 58	minus	ABC01889 ABC01890 ABC48775
MLOC	MLOC_61726.2	1973	2e-23	501 - 558	100	58 / 58	minus	ABC01889 ABC01890 ABC48775
JLOC1	JLOC1_40351.1	1493	1e-23	95 - 152	100	58 / 58	minus
Harvest21	ABC01889	1291	3e-25	1218 - 1277	100	60 / 60	plus	ABC01889
Harvest35	U35_14282	1291	3e-25	1218 - 1277	100	60 / 60	plus

Contig Sequence (1291 bp)

>U35_14282 1291 Hv_44K_v2
AAAGATCCCTCACTACCATGTACCCTCCCCAAGCCCGCACCGAGACCAAATCCTCGCTAG
GGTTTTACTCCCGCGCCGCCGCCCGTCCCCAAATCTCCCCCGGAAAGGCCACCATGGCCG
GCGGTCCCGCGGCGGTCTCGTTCCTCACCAACATCGCCAAGGCGGCGGCGGGCCTCGGCG
CCGCGGCCTCCCTCCTCTCCGCGTCGCTCTACACCGTGGACGGCGGCGAGCGCGCCGTCG
TCTTCGACCGGTTCCGCGGGGTGCTGCCGGACACCGTCGGCGAGGGCACCCACTTCATCG
TGCCGTGGCTCCAGAAGCCCTACATCTTCGACATCCGCACCCGCCCGCACAACTTCTCCT
CCAACTCCGGCACCAAGGATCTGCAGATGGTAAACCTCACCCTCCGCCTCCTCTCCCGCC
CTGACGTCGTCAACCTGCCCACCATCTTCACCTCCCTCGGCCTCGAGTACGACGACAAGG
TGCTCCCCTCCATCGGGAACGAGGTGCTCAAGGCCGTCGTCGCCCAGTTCAACGCCGACC
AGCTCCTCACCGACCGCCCCCACGTCTCGGCGCTCGTCCGCGACTCCCTCATCAAAAGGG
CCCGCGAGTTCAACATCATACTCGACGACGTCGCCATCACCCACCTCTCCTACGGCGCCG
ATTTCTCCCAGGCCGTCGAGAAGAAGCAGGTCGCACAGCAGGAGGCTGAGCGCTCCAAGT
TCCTCGTCGCCAAGGCCGAGCAGGAGAGGCGCGCTGCCATTGTGCGTGCTGAGGGAGAAA
GTGAGTCTGCACGGCTCATTTCTGAGGCCACAGCCATCGCTGGGACAGGCCTGATCGAGC
TCAGGAGGATCGAGGCTGCCAAGGAGATCGCCGCTGAGCTGGCCCGCTCACCCAACATTG
CCTACATCCCCTCTGGTGACAACGGCAACATGCTGCTCGGCCTCAACGCTGCTGGAATGG
GCGGCCGGTGATTTACCACTCCCGTTTTACTTGCCCAAACATCATCTTGCGTCATGAAGG
ACTAAACTGTGGTTTGGAGAGACAATGCTATCTGTTGCTGTAGGTCTTGTTAAGTTTGAT
TCTCCTGGGACAAAATCTGGCAGTCTTTGATCCAAATAAGGTCTGGGTCTGGATATCTCA
TTTATGATTTGCCAGATTAAGCTTTCTGGTGGTGACGTGGTGTTGAATTTGCATGCTAGT
TATGCTTATGATGTTTGCTTGTTTGATATCATTGTTTTCTAACGCTGCAGGGGTTGCTTG
CATTAGCCACAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14282 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37000.1	283	6e-131	protein\|mitochondrial prohibitin complex protein 1, putative, expressed
Brachypodium v1_2	Bradi5g12530.1	286	3e-149
Arabidopsis v10	AT5G40770.1	277	1e-121	\| Symbols: ATPHB3, PHB3 \| prohibitin 3 \| chr5:16315589-16316621 REVERSE LENGTH=277