barSeed - Barley Seed Development Database

Probe CUST_25325_PI390587928

Source Contig U35_38367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25325_PI390587928	Hv_44K_v2	CAGTTCAATCTTTAGCAATTCACCTTGTACTATCTGTTGATGAGTGATGATGATGGTAAT	681	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.657	4.645	0.808	0.660	1.044	0.929
Raw	68.666	47.917	6.856	8.138	3.088	3.020

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59906.1	815	2e-24	141 - 200	100	60 / 60	minus	None
JLOC1	JLOC1_39025.1	1089	8e-25	824 - 883	100	60 / 60	plus
Harvest21	ABC34311	741	3e-25	682 - 741	100	60 / 60	plus
Harvest35	U35_38367	741	3e-25	682 - 741	100	60 / 60	plus

Contig Sequence (741 bp)

>U35_38367 741 Hv_44K_v2
GGCTCTCTCTCCCTCTCTCCCCCCCTCTCTCTCTCTCTCTCCATTTGAAGCGAACCTTCA
TAGAATTAGTACGTGGAGGATTAACTGCAGAGACAATCAGAGAGAGGGACATAATGTCGA
GGGAGCGCAAGAAGGCGGCTGCTCTACAGGAGAAGATGCAGATTCTGCGCTCCATCACTC
ATTCCCACGCGCTGAGCAATCCTTCCATAGTCATGGACGCGTCGGAGTACATCAAGGGGC
TGAAGCAGAAGATCGCCAGGCTCAATCAGGAGATCGCACGCGAGGAAGACGCACACTCGC
GCAAGCAGAACTCTTTCCCCACGGTGAGCGTTGAAGCCCTAGGGCATGGGTTCCTCGTGA
ACGTGTCCTCCGACAAGAGCTGCCCTGGGTTGCTCGTCGCCGTGCTGGAGGCGTTCGAGG
AGCTGGGCCTCACCGTGCTCCAGGCCACGGCGTCTTGCGCCGATACGTTCCGCCTCGAGG
CCGTCGGAGGAGGAGAGAACCAGGCGGGGAGTGTGGATGAGGGTGTCATCAGGCGGGCGG
TGCAGCAGGCCATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCACCCCCACATTT
TCTTCTCGATCGATCTGCCCTTTGCAAAGTTTTATGGCTCTTCTCTCGATCTAACGGATG
AGCTGCGATGATATATGCATCCAGTTCAATCTTTAGCAATTCACCTTGTACTATCTGTTG
ATGAGTGATGATGATGGTAAT

Homology of Contig U35_38367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47960.1	158	9e-56	protein\|basic helix-loop-helix domain containing protein, expressed
Brachypodium v1_2	Bradi1g63040.1	167	5e-56
Arabidopsis v10	None