barSeed - Barley Seed Development Database

Probe CUST_2531_PI390587928

Source Contig U35_14283

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2531_PI390587928	Hv_44K_v2	GAGGATCATTGAACAATGTCGTATTTTAGTCGCCAACCTATGATATATTTGTGCTTATGA	1012	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51450.3	1027	2e-24	769 - 828	100	60 / 60	plus	ABC01889 ABC01890
MLOC	MLOC_51450.2	1522	2e-24	1162 - 1221	100	60 / 60	plus	ABC01889 ABC01890
JLOC1	JLOC1_32870.1	1519	8e-25	1184 - 1243	100	60 / 60	plus
Harvest21	ABC01890	1122	3e-25	1010 - 1069	100	60 / 60	plus	ABC01890
Harvest35	U35_14283	1125	3e-25	1013 - 1072	100	60 / 60	plus

Contig Sequence (1125 bp)

>U35_14283 1125 Hv_44K_v2
GACCCAAACCCCAACGAAAATCCATACCCGAACTAGGTCATCCATGGCTGGCGGCGGGCA
AGCAGCGGTCTCGTTCCTGACGAAGGTCGCGAAGGTGGCTGCCGGGTTGGGCTTGGCGGC
ATCTGCGGTCTCCACGTCCCTCTACACGGTGGACGGCGGCCAACGGGCGGTCATCTTCGA
CCGCTTCCAGGGCGTTCTCCCGGCGGTCGTCTCGGAGGGCACCCACTTCCTCGTCCCCTG
GCTCCAGAAGCCCTTCCTCTTCGACATCCGCACGCGCCCGCACAGCTTCTCCTCCACATC
TGGAACCAAGGATCTGCAGATGGTCAGCCTCACGCTCCGCGTCCTCGCCCGCCCCGATGT
GGAACGCCTTCCTGAAATCTTCACCAACCTCGGTCTCGACTACGACGACAAGGTGCTCCC
CTCCATCGGCAACGAGGTGCTCAAGGCCGTCGTCGCCCAGTTCAACGCAGACCAGCTCCT
CACCGACCGTCCCCACGTGTCTGCCCTCGTCCGTGAAGCCCTCGTCCGCCGCGCCGGCGA
GTTCAACATCGTGCTCGATGACGTCGCCATCACCCACCTCGCCTACGGGCACGACTTCGC
CCAGGCCGTTGAGAAGAAGCAGGTCGCTCAGCAGGAGGCTGAGCGCTCCAGGTTCCTCGT
TGCGCGTGCAGAGCAGGAGAGGCGTGCTGCTATCGTTCGCGCGGAGGGAGAGAGCGAGTC
CGCACGGCTCATCTCAGATGCCACCGCTCTTGTAGGCAATGGACTGATCGAGCTCAGGAG
GATCGAGGCTGCCAAAGAGATAGCTGGGGTGATTGCTCGCTCACCAAATGTTTCCTACAT
CCCTTCCGGCAACAACGGCAAGATGCTGCTTGGGCTCAGTACTGCCCGGTGAATGAATTG
TCACTTACCTTCCAGTTTATCACAGTACTTTAGTCACTTCAGATGTCCAATTACCCTTCA
CTTGATTCCAATATTTAAATAACTTTATCGTAAAATGGAGACTTTTATTATGGAGGATCA
TTGAACAATGTCGTATTTTAGTCGCCAACCTATGATATATTTGTGCTTATGATACATTCT
TGAGTTATGTGAACCTTTTTATTATTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14283 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37000.1	283	1e-143	protein\|mitochondrial prohibitin complex protein 1, putative, expressed
Brachypodium v1_2	Bradi3g46980.1	283	9e-154
Arabidopsis v10	AT5G40770.1	277	4e-118	\| Symbols: ATPHB3, PHB3 \| prohibitin 3 \| chr5:16315589-16316621 REVERSE LENGTH=277