barSeed - Barley Seed Development Database

Probe CUST_25316_PI390587928

Source Contig U35_2567

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25316_PI390587928	Hv_44K_v2	GGCTCCTCTCTTGCTTGCCATGTAATAATGTGTTGTCATTGCTATTTTAATCTTGCTACT	1399	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.305	0.510	1.202	1.525	1.138	1.193
Raw	790.852	2028.398	4333.377	8251.187	2230.443	2548.610

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24232.1	1331	8e-25	1191 - 1250	100	60 / 60	plus
Harvest21	ABC06164	1367	3e-25	1247 - 1306	100	60 / 60	plus	ABC06164
Harvest35	U35_2567	1520	3e-25	1400 - 1459	100	60 / 60	plus

Contig Sequence (1520 bp)

>U35_2567 1520 Hv_44K_v2
GAGACCAAGATGTTCGCCGACGCGGGGTTCAGCTTCTCCCCATCCTACTCTTCTTCTTCC
TCGCCGCCGTCCGCCTACTCGGGTTACTCCCCCACCGTCTTCTCCCACTCCTCCTTCGCC
GCCACCCCTGCATCTGCATCCAACCACGCTGCACCGCCTCTGCCTCTGCCTCTCCTGCAT
CAACAACAACAACAACATCAGCATCAGCATCAACAACATCAACATCAAGCCGCCGCCGCC
GCCGCTGCACCCGACGACGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCATGTACCACCAC
CTCGCGGACATGGGGCAGCCATCCCTGATATCAGAGTATGACCTGGGAGCAGAGGGCGAC
CTGTTCAAGGCACCTGAGCCCATAGTCGAGGAACCGCTGCTCGCCCTCGACCCGGTCGCG
GCCGCCATCTCCATGATGTCCGGCGGGGAGGACGACAACGCCATCAGTGCCTCAGACATG
GGCCTGAGCGAGGCGCTGTACGAGTGCGAGAAGGAGCTCATGGAGGAGTCGGCGATCGAG
GAGACCATATCGGAGCTGCTGGACGTCAAGATCCCCATGCTGCAGGTCGAGGACGTCCCC
GGGGAGCTCAGGGCCTCCTCCTCGTCGACAGTTGCCGCTGGTGAATGCTCGCTCCAGAAG
AGCGTCAGCTCCGGGTGCCTCAACTCCGCGGACTGGATGAACGGGTCGGCGGCGAGGCCC
AACTTCCTCGACTTCCAAGGGCTCGACTTCGAGGCCGCCTTCGGGCTCCGGCGAGCCTAC
AGCGAGGGTGACATTCAGAACCTTGGTGCCAATAATACCCCTCGGCCTGGGATCGCAGGG
AACATGCACGCATCTGGTGAGAGGCTTGTGACCATCAGTGACCTGAAAAGTGAGGAGAGG
AAGCAGAAGCTCTCCAGGTACAGGAAGAAGAAGATCAAGAGGAACTTTGGCAGGAAGATC
AAGTATGCTTGCAGGAAGGCTCTAGCAGACAGCCAGCCGAGGGTGCGAGGGAGGTTCGCC
AAGATGGACGATGGCGACATGCTCAAGCCGAGGAAGTAGGACGGCCATGGAAGACCGCCT
GCTGCCAAACTCATGAGGAAGACAAGGTTGTTGCAAGGAAGGAATTGAGCTGCCAGTGGC
TTGTCTGCGTCTAGAAGCTTCTAGGGCGATGGCCGCTGTGCTGCGCCGCCCCGCCCATTG
GAATTCGTTTTCGCTCGCTCCATCAAATCCGTTCCTTTGGGTGACATTTTCTATTTTCCG
TGTTCGTTTGTAATAATATGATGGTCCTCCCAGTGGTGGTGCAAGAGAGTGGAGAGCCCT
AGCTAGGCAGCCAGGCTCCTCTGTGTACAAAGGCTTGAACTTGAACTTGGACTTGGTACT
AATAAATAAATAAAACCCAGGCTCCTCTCTTGCTTGCCATGTAATAATGTGTTGTCATTG
CTATTTTAATCTTGCTACTTATTGCTAGTTGCTGAAATAGAAATAGATGTAGTATCTAGA
CAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51690.1	309	6e-125	protein\|CCT motif family protein, expressed
Brachypodium v1_2	Bradi2g14220.1	328	6e-138
Arabidopsis v10	AT5G53420.1	264	4e-58	CCT motif family protein \| chr5:21673683-21675469 FORWARD LENGTH=264