barSeed - Barley Seed Development Database

Probe CUST_25315_PI390587928

Source Contig U35_2568

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25315_PI390587928	Hv_44K_v2	CTTGAACTTGAACTTGGTACTAATAAATAAATAAAACCCAGGCTCCTCTCTTGCTTGAAA	585	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.278	0.474	1.135	1.463	1.074	1.162
Raw	912.470	2316.924	5115.597	9870.907	2639.407	3126.240

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24232.1	1331	2e-21	1151 - 1207	98	56 / 57	plus
Harvest21	ABC06164	1367	6e-22	1207 - 1263	98	56 / 57	plus	ABC06164
Harvest35	U35_2568	660	3e-25	586 - 645	100	60 / 60	plus
Harvest35	U35_2567	1520	6e-22	1360 - 1416	98	56 / 57	plus

Contig Sequence (660 bp)

>U35_2568 660 Hv_44K_v2
GGGTGACATTCAGAACCTTGGTGCCAATAATACCCCTCGGCCTGGGATCGCAGGGAACAT
GCACGCATCTGGTGAGAGGCTTGTGACCATCAGTGACCTGAAAAGTGAGGAGAGGAAGCA
GAAGCTCTCCAGGTACAGGAAGAAGAAGATCAAGAGGAACTTTGGCAGGAAGATCAAGTA
TGCTTGCAGGAAGGCTCTAGCAGACAGCCAGCCGAGGGTGCGAGGGAGGTTCGCCAAGAT
GGACGATGGCGACATGCTCAAGCCGAGGAAGTAGGACGGCCATGGAAGACCGCCTGCTGC
CAAACTCATGAGGAAGACAAGGTTGTTGCAAGGAAGGAATTGAGCTACTGCTGAGCTGCC
AGTGGCTTGTCTGCGTCTAGAAGCTTCTAGGGCGATGGCCGCTGTGCTGCGCCGCGCCGC
CCATTGGAATTCGTTTTCGCTCGCTCCATCAAATCCGTTCCTTTGGGTGACATTTTCTAT
TTTCCGTGTTCGTTTGTAATAATATGATGGTCCTCCCAGTGGTGGTGCAAGAGAGTGGAG
AGCCCTAGCTAGGCAGCCAGGCTCCTCTGTGTACAAAGGCTTGAACTTGAACTTGAACTT
GGTACTAATAAATAAATAAAACCCAGGCTCCTCTCTTGCTTGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None