barSeed - Barley Seed Development Database

Probe CUST_25308_PI390587928

Source Contig U35_2575

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25308_PI390587928	Hv_44K_v2	TCTTACAGACAAATATGGTGGTAGCTGGTCAGGGAAGGCCTGAATCATGTTATTGCCCAT	747	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59923.1	1540	2e-24	562 - 621	100	60 / 60	plus	ABC14352
JLOC1	JLOC1_39037.1	1646	8e-25	639 - 698	100	60 / 60	plus
Harvest21	ABC17871	978	3e-25	748 - 807	100	60 / 60	plus
Harvest35	U35_2575	1022	3e-25	748 - 807	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_2575 1022 Hv_44K_v2
CAGCCGCGCGGCCGCCTGCGACTGGGGGCGCCGCCCGTGCTCCGATGGTCGGGATGTACC
AGAAGCAGCTCCTCGACGCCCCTTTCGCCCTAAACGGCCACTGCGCTGACCAGCCACGCC
ACGCGCCGCCCGCCGCCGCCGCCGCTCCCCCCTCGCCGTGTCCGCCCAACCCCTCCTCCT
CCGCCTCCTCCTCAGGCGTTGCCGCCTCGCCGCAGGGGCAGGCAGATGGCGCCGGCGAGC
CGCGTCGGCTTTTCCAGGCGCTCGTCGGGGGGATCCTGCAGCGCAGGTCCGGAGGCGGCA
ACGGCGTGGCTGTGGATCTGGAGGCGCTGGTGTCGTGGGCGCGGGAGGCCGCCGTGGATC
CCTGCGCGAAGCGGCCGGCGGACAGGCCGAGGAAGCGGCAGGTGCTGGCGTTGCGGCGCG
CGCGCTACCTCAGGATGGAGGACGTGACGGACCAGGCCGAGCTCCCCAGCTTCTCCAAGA
AAAGGAAGTACAGAACTAACAACCAATCAGAAAGACAAAGGAAAGGGTCAACCCCAACAA
GGAAATCCGAGAGGCTAGCTAGGAGAATGGTACTCATGACATCAGTGCTTCTGACGCAAA
GGAAAAAGATTGGAGTAGGTGAGCAGTTTCAGGCAGAGATACCTGACTGGACTGGACCCC
CTTCAGACACAGAGCTTTCTTGTTACAGGAATGACCCGAACATCTCAAAGATGCTAGGAA
GCAGAACTTGGCCACCTGAAGGTTATGTCTTACAGACAAATATGGTGGTAGCTGGTCAGG
GAAGGCCTGAATCATGTTATTGCCCATATCCAGGATCCTTCTTTTGCAGAGAACATCACA
TCAACACCGCAAGGGATCGGTTAAGGTCTGAAATTGGTCAAGTTTTCATGGAATGGAAAT
TTGATTTGATGGGCGAGCAGGTTTCTAAGATGTGGAGTATTGAGGAGCAACTAAAGTTTA
ATGCACTTGAGCAGTTGATTCCTGTGATGGAAAATAAGAGTTTTTGGGGCGATAGCGGCA
AA

Homology of Contig U35_2575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63354.1	404	1e-129	protein\|ELM2 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g55170.1	390	6e-157
Arabidopsis v10	None