barSeed - Barley Seed Development Database

Probe CUST_25306_PI390587928

Source Contig U35_2577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25306_PI390587928	Hv_44K_v2	ATAACACAAATTTTTGCTACACCAAAAGATCATCGGAAGGCGAAACCTTTTCATGATCAT	785	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6092.2	1394	2e-24	764 - 823	100	60 / 60	plus	ABC06294 ABC06295
MLOC	MLOC_6092.1	1458	2e-24	750 - 809	100	60 / 60	plus	ABC06294 ABC06295
JLOC1	JLOC1_3953.1	1491	8e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC06296	868	3e-25	809 - 868	100	60 / 60	plus
Harvest21	ABC06294	1003	3e-25	262 - 321	100	60 / 60	plus	ABC06294
Harvest35	U35_36660	507	3e-25	262 - 321	100	60 / 60	plus
Harvest35	U35_2577	845	3e-25	786 - 845	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_2577 845 Hv_44K_v2
CAGTAAAAATCGTCAATTTCTTCCCTGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCTCCT
CCTCCCTTCTTCTCCAGACGAAGCGCCGCGGTGTTGTTGCCGGGCGTGTCCTCGGGGGAA
CCACGGCCCTGCCTGCGCCGGCGCTCACTCGGACGGCTCCTGCGCCGCGCCTCCGGTGGC
CGCTTCTTCCTCGACTCCGGCACAAGATTTTGCCCTTAAGTGCTGAAGCCCCAGCGTCTC
ACGCCATGGCGAAGAAGAGGAAGCGCAGCTCCGATGCTACTGCCCCTGCTGCCATAGAGA
AGCCTGATGACTCTGCACCAGAGCGGCCGGAACGCACCCTCTTCGGGTTCAAGGACTCGG
CCGCCGAGCCTGCTTCTAAGGACGAAGGGCCGTTCTTCCGGAACAAGGAGAAGGTGCTCA
TTACGTGCTCCCGCCGCATCATCTACAGGTACCGGCATCTGATGCAGAACGTGGTGTCGC
TGCTGCCACATGCCAAGAAGGACAGCAAGGTTGAGTCCAAGCAGAGCAAGGGCAGTGCGC
TGAATGAGCTGGTCGAGCTCAGGAGCTGCTCCAGCTGCCTCTTTTTTGAGTGCAGAAAAC
AGAAAGATCTTTACCTTTGGATGGTCAAGTCTCCTGCAGGGCCATCTGTGAAATTTCTAG
TCAATGCTGTTCACACTATGGAAGAACTGAAGCTCACCGGCAACCATCTGAAAGGGTCCC
GTCCTTTGCTAACCTTTTCTTCAAACTTTGACCAGCAGCCTCACTGGAAGCTATTGAAGG
AAATGATAACACAAATTTTTGCTACACCAAAAGATCATCGGAAGGCGAAACCTTTTCATG
ATCAT

Homology of Contig U35_2577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37870.1	332	3e-116	protein\|Brix domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g47400.1	323	7e-135
Arabidopsis v10	AT1G52930.1	320	2e-97	Ribosomal RNA processing Brix domain protein \| chr1:19711261-19713103 FORWARD LENGTH=320