barSeed - Barley Seed Development Database

Probe CUST_25305_PI390587928

Source Contig U35_2578

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25305_PI390587928	Hv_44K_v2	TCTCATGTCATTTTCCCCTTGGATCTGTTGGCAGGAGTAATATATATCCCCCTTAAAAAA	1294	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.999	2.191	1.165	0.634	0.235	0.258
Raw	810.242	909.622	431.225	375.913	48.536	57.953

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3953.1	1491	5e-22	1422 - 1476	100	55 / 55	plus
Harvest21	ABC06294	1003	3e-25	933 - 992	100	60 / 60	plus	ABC06294
Harvest35	U35_2578	1365	3e-25	1295 - 1354	100	60 / 60	plus

Contig Sequence (1365 bp)

>U35_2578 1365 Hv_44K_v2
ACTCCCGCGTCGCCGCCGCCGCCGCCGCCTACGCCGCCGCCTTACTCTGCCGCAGCCCCA
GCGCCTTGCCCCCCATGGCGAAGAAGAGGAAGCGCAGCTCCGATGCTCCCGCGGCCGCGG
CCATAGAGAAGCCTGACGACTCTGCGCCGCAGCGGCCGGAGCGCACCCTCTTCGGGTTCA
AGGACCAGCCGGACTCCGCCGCCGAACCTGCTCCTAAGGACGCGGGGCCCTTCTTCCGGA
ACAAGGAGAAGGTACTCATTACGTGCTCACGCCGCATCATCTATAGGTACCGGCACCTGA
TGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTTGAGTCCAAGC
AGAGCAAGGGCAGCGCGCTCAACGAGCTGGTCGAGCTAAGGAGCTGCTCCAGCTGCCTCT
TTTTCGAGTGCAGAAAACAGAAAGATCTTTACCTTTGGATGGTCAAGTCTCCTGCAGGGC
CATCAGTGAAATTTCTAGTCAATGCTGTTCACACTATGGAGGAACTGAAGCTCACTGGTA
ACCATCTGAAAGGGTCACGTCCTCTGCTAACGTTTTCTTCAAATTTTGACCAGCAACCTC
ACTGGAAACTCTTGAAGGAAATGATAACTCAAATTTTTGCTACTCCAAAAGATCATCGGA
AGGCAAAACCTTTTCATGATCATGTCTTTGTCTTCTCCATTGTGGATGACCACATTTGGT
TCAGAAATTACCAGATTTCTGTACCCCACAATGAGATTGATAAAGTTGATAAAGGAGGCC
TAGATAAAATGACACTTGTTGAGGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATAT
TTGGTGGTAGTTTTGGTGGCCCCACATTGTATGAGAACCCATTCTATGTGTCTCCCAATC
AGATCCGCGCACTAGAGAAGAGGAAGAAGGCAGGCAAGTACGCCAAGAAGGTGAAGGCGA
AGGTGAGGAGGAAGATGCACGAGATGGAGAACACCCTGGAGCCTGATGAGTTTGCTGATC
TCTGGAAAGGGGAAGACTAGCAAAGCTAGTGCGGGCGCAGCAGTGACTGTACCAATGAAT
TCGATCGGCGAACTGATGCATGCTGGCCATCGCCAAGCACTGAATTTTGCGTTCTTGTAT
GACAATCAAAGCATATTTTCACTATGTAAAACAACTGGATTCCGTTCTTGCTCGTATCCA
TATCGCCTTGCTACTGGCTGTGTGTATCCATATCGTATCCTTGTCTTTTGTTGCAAGCAA
ATGAGCAAAGCCTCGGTAAAAACTATGGATACGATCTCATGTCATTTTCCCCTTGGATCT
GTTGGCAGGAGTAATATATATCCCCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37870.1	332	0.0	protein\|Brix domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g47400.1	323	0.0
Arabidopsis v10	AT1G52930.1	320	7e-165	Ribosomal RNA processing Brix domain protein \| chr1:19711261-19713103 FORWARD LENGTH=320