barSeed - Barley Seed Development Database

Probe CUST_25290_PI390587928

Source Contig U35_2593

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25290_PI390587928	Hv_44K_v2	ATACAGTATGTCTGAAGACATCCGGGTTGATGAATAAAGCTTGCTGTTCTCCTCAAAAAA	1746	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15402.1	2697	9e-22	626 - 680	100	55 / 55	minus	ABC06441 ABC06442 ABC25481
JLOC1	JLOC1_10561.1	2482	5e-22	2018 - 2072	100	55 / 55	plus
Harvest21	ABC06442	1785	3e-25	1715 - 1774	100	60 / 60	plus	ABC06442
Harvest35	U35_2593	1869	3e-25	1747 - 1806	100	60 / 60	plus

Contig Sequence (1869 bp)

>U35_2593 1869 Hv_44K_v2
GCTCTTCTCCAGCACAAACATCCCTCTCCTCCGCTTGCCCTCCTTTCCTCTTCCTCTTCT
TGGCCAGACGGACGGACACCCACCCACCCACCCACGCCGGATCGAGCGCCTCCTCCCGCC
CCCGATTGACCTGCAAAACACACTAGATTTTATGATCCAAGAACGTGTGGGGAGCTCCTA
GAAGAAGAACCAAGTTGATCCTGCAAAATTGGGTAGCTGGTCCGGCAGGGCTGGCTTCAG
AAGATCAGCCACGGCTCTAAGGAAAGGAACCCGCGTCACACCAAGAAGGGGAAGACAATG
TGTCCATCGCTTTCCTAAGTTTCTGCTCGCATCGCCTTCTTTCCACGGTGGCCGTGGTGC
CCTCCCATCTGCAGGGGGGCATCCTTCTGACCTCACCTACCTTGCTGGTGGTGGTGCTGC
TGCACAAGTCTGAAGTAGGCTTTTAGCTTTGTAGTTAGTTGAGTTCGTAGTCTATATAAT
AAGAATTGTAAGTATGGTGTCGGCCACCAAACTAGAAGGTGGATATTCTTTTGACAGCAA
GAACTCTCCTCTGGATCAACCTGAAGGTGTGAAGATACATCTTTACCGTCTTGGTATAGA
ACAGTGTGAACATGATGCCCTCAAAAGCTTTGCATGTGCTGGTCAAGGCAGCCCAAGTTT
ACTTGATACAATCATTCTTTCTCAGTGGGAGAACTTTGCTCAGAAGGGCCAGTTGGGATA
CGATGTTACTACTTGCGAACTTAAGGTGATTGAAGGTCAAAGGGATTTTGTTATTCAGAT
GAATGATAAATGGAATTCATTTTCCCTCAAGAAATATGACAAGTTCGGCCTTCCTTTTGG
ATGCTTGAAGCCAAATTCTGGTAGAAGCTATGAGGAATTACTTTTGTGCATCGCAGAAGG
AGAAAATAGTGAACCGGAGGTTGTTCCTTCGACTACACCCCCAAACAATGGAGTACTGCT
GATTGCGAATGCATATCCTGTTGAATATGGTCACATTTTCTTGGTCCCAAATGCAACTAA
TCAGCTATCTTCCTTTTGGGATAAAAGGATGTTTGGGCTGATTACAAAGATTGCCTCTGA
AGTAAACAGTGCAGCGTTCCGGGTTTTCTTTGATGATGGTACATCTATTGTGCCAAAGCA
CATGTTTTTTCAGGCCTGCTACTTTGCTAATCCTTTACCAGTGGAGTCTGCCTCAACTGT
TGCATTATACGATGGGACAACCAGATCAGGCATTTGTGTGTCTGAAATAGTTGATTACCC
TCTAAAAGCTATTGTGTTCACCAGCAACAATGTAAACGCACTTATCGATGTAGTCAGTGC
AGCATGCTTAGCTTTGCATGAGAACAATACTGCACACAGCCTAATGATATCCAACAATGG
AAGAAATGCTTTCTTATTCCCCCAGGTGAAAAATCTGGTCACTGGCTGCTATCTTTCTGC
CTGGGAGTGCTGTGGCTACTTTGTTTATCACACCAAAGTTGATTTCGAGCAAGCTTCTGA
GACTGGAATTTCCAATAGGATGGCTTCGTTCTCGTTCCAAGATGGTGACTTTGAAGACCT
GAAAAAACTCTGTTGCGCTATAGCTGATGACCTTGTTACCTAAGCCTACGCTGTATGCAA
CCATCAACAGTTCGTGTGTCGGTTCATTATGTAAAATAACCCACAATGTAACTGCAACTA
TAGACGTCGTGTATCGTGCTCCTCCATTCCCTGTGTTTGGTGGTTTATGCCTAAATACTA
TGAAACATACAGTATGTCTGAAGACATCCGGGTTGATGAATAAAGCTTGCTGTTCTCCTC
AAAAAAAAAAAAATTTCTGAACATTGCAAGGATTGTGCAATGATATTTCAGCTACTAAAA
AAAAAAAAA

Homology of Contig U35_2593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41800.1	369	0.0	protein\|VTC2, putative, expressed
Brachypodium v1_2	Bradi4g01940.1	370	0.0
Arabidopsis v10	None