barSeed - Barley Seed Development Database

Probe CUST_25289_PI390587928

Source Contig U35_2594

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25289_PI390587928	Hv_44K_v2	TCGCGGTGCAGGTAGGCCTGTCGACTATATGTTTTTGGTCACAGAAGTTTCATCAAAAAA	849	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.262	0.304	0.784	1.832	1.423	1.270
Raw	396.932	747.527	1680.773	5980.273	1658.353	1617.187

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375360	954	9e-22	806 - 860	100	55 / 55	plus	ABC08084
JLOC1	JLOC1_15513.1	799	5e-22	657 - 711	100	55 / 55	plus
Harvest21	ABC08084	911	3e-25	841 - 900	100	60 / 60	plus	ABC08084
Harvest35	U35_2594	920	3e-25	850 - 909	100	60 / 60	plus

Contig Sequence (920 bp)

>U35_2594 920 Hv_44K_v2
CGGATGAGAAGAAGATAGGAAAGAAGAGCAGAGCAGAAAGACAGTAGCCGACTCCTCCCT
CCCTCCCTCCCAGTGCACAGCCATGGCCACCACAACCTTATCCCTCCACGGGCTCCCTTC
CCCGACCGCCAAGAAGCTCACCTCCTCCTTCCTCGGCGCCCCCTCCTCCTTTCTCCGGCC
GGCGGCGCTTGCCGCCGCCGCCCCGCCCACGCGGAGGGTGTTCGCCGTCAGGGCCATGGC
GCCCCCCAAGCCCGGGGGCAAGCCCAAGAAAGTGGTGGGCATCATAAAGCTGGCGCTGGA
GGCGGGCAAGGCGACGCCCGCGCCACCCGTCGGACCGGCGCTCGGTGCCAAGGGTGTGAA
CATCATGGCCTTCTGTAAGGATTACAATGCCAAGACGGCCGACAAGCCCGGCTACATTAT
CCCCGTCGAGATCACCGTGTTCGATGATAAGAGCTTCACCTTTATCCTCAAGACACCTCC
TGCCTCAGTACTGCTCCTCAAGGCTGCAGGTGTCGAAAAAGGCTCAAAGGAGCCACAACG
TGAGAAGGTTGGAAAGGTGACTGTGGACCAAGTACGCACGATCGCCCAGGAGAAGCTGCC
TGACTTGAACTGCAAAACCATTGAGTCTGCCATGAGAATCATAGCGGGCACTGCCGCTAA
CATGGGCATCGATGTCGACCCACCGATCCTGGTGAAGAAGGAGAAGGTGGTCTTCTAGTC
AGCTCGCCTCCATCTGTACATTTTTTGCTTCATTTTTGTACACAAATATGTTGTGGTGCA
CAGTTGTGATATTCTTCTAGGCAAATTTGTAATCATTTGCTTCGGTATCAAAAAAAAAAA
AAAAAGCTCTCGCGGTGCAGGTAGGCCTGTCGACTATATGTTTTTGGTCACAGAAGTTTC
ATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03020.1	211	4e-101	protein\|L11 domain containing ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi1g77060.1	214	8e-109
Arabidopsis v10	AT1G32990.1	222	4e-83	\| Symbols: PRPL11 \| plastid ribosomal protein l11 \| chr1:11955827-11957139 FORWARD LENGTH=222