barSeed - Barley Seed Development Database

Probe CUST_25288_PI390587928

Source Contig U35_2595

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25288_PI390587928	Hv_44K_v2	GAATTTTCAATGTGAAAATAACGAGTGTCAAACACTTGGGGAGCTTCCATTTGCTATAAA	885	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18414.1	236	2e-24	7 - 66	100	60 / 60	minus	ABC06787
Harvest21	ABC06787	1428	3e-25	1355 - 1414	100	60 / 60	plus	ABC06787
Harvest35	U35_2595	959	3e-25	886 - 945	100	60 / 60	plus

Contig Sequence (959 bp)

>U35_2595 959 Hv_44K_v2
GTGAATCCGACAACTCGAATGACGACCTCGCCAGGGGTTGGTCCGGCGTTCAGACAGTTC
CAAGGAAGCTGTGGCTGGACGGAGATGGCAAGCAGCTACGACAGTGGCCAATCGAGGAGA
TCGAGAGGTTGAGGAGCAAACGAGTCGTCGGCATGCTCGGAGCGCAGGTGAACGCCGGCG
GCGTGAAGAAGATCGTTGGCGTGGGCGCGCAGGCTGACGTGGAGGCCATCTTCGAGATCC
CGTCCCTGGAAGAGGCCGAGACCTTCCAACCCAACTGGCTGCTGGACCCCCAGAAGCTCT
GCGCGGAGAAGGGCGCGTCCGTGCCGGGCGGGGTCGGCCCATTCGGGCTGCTCGTCATGG
CCTCCGGTGACTTGCAGGAGCACACGGCCATCTTCTTCAGAGTGTTCAGGCACGACCAAA
AGTACAAAGTTCTCATGTGCACCGACCTCACAAGATCGAGTGGGAGAGACAAGGTGTACA
AGTCGCCGTATGGAGGGTTTGTGGACATAGACATCGAGCAGCACGGGAGGAGCATATCTC
TTAGAACATTGATCGACCATTCAGTGGTGGAGAGCTTTGGAGGCGGGGGGAGGACGTGCA
TCACCGCACGGGTGTACCCTCAGCACGCCGAAAACAAAAATAGCCATGTATTCGTGTTCA
ATAACGGGACCGGCCTCGTGAAGGTTTCCAAACTCGAAGCATGGAGGCTGGCCACGGCTG
CTGTAAACGTTGTGCATGGCGGGTGACTTCCTTAATACTCCTCATGGAGTACTATGTAGA
AGTGAGGCTCGAAATCATGACTGACTAGACCACCACCTCATGGTGCGAGCTAGTATAACC
CATGTCATTTGTCCCTGAAAAGTAAGGGGTTATTGTAGCAGTTTTGAATTTTCAATGTGA
AAATAACGAGTGTCAAACACTTGGGGAGCTTCCATTTGCTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_2595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g08072.1	596	3e-97	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi5g25270.1	620	5e-96
Arabidopsis v10	AT1G55120.1	594	3e-65	\| Symbols: ATFRUCT5, AtcwINV3, FRUCT5 \| beta-fructofuranosidase 5 \| chr1:20566617-20569165 FORWARD LENGTH=594