barSeed - Barley Seed Development Database

Probe CUST_25273_PI390587928

Source Contig U35_17311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25273_PI390587928	Hv_44K_v2	ATCTGAACCACAGTTGTTCATCATAATTTTCATCTGAATATGAAGTTTGCATGCAAGCAG	1840	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.091	1.427	1.435	0.894	0.192	0.221
Raw	82.363	167.879	148.667	153.439	10.751	13.860

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_4450.2	1643	8e-25	1577 - 1636	100	60 / 60	plus
JLOC1	JLOC1_4450.1	1649	8e-25	1583 - 1642	100	60 / 60	plus
Harvest35	U35_17311	1924	3e-25	1841 - 1900	100	60 / 60	plus

Contig Sequence (1924 bp)

>U35_17311 1924 Hv_44K_v2
GAAGAACTCCCCCTTCAAGCCGTCGATCGATCCACCCGCGATACGAAAGCGAGCGAACGT
AGATTTCGTAATAACCTTGAGCCGCGGAGAAGGGTCGCCGTAAAGCTCGCCGGAACCCGC
CGTGGCTGCACTCGCCGGCGGGGAAGAGGGCTCGCGGGTTGCGCGCTTCTTCTCCTCGGT
GCTCTCCGGGATCTTTGGCCAGGGCGAGGAGGGGGACGCGATGGCCGCACGTAATCCGAA
CGTCGCTGCCGCTCAGCAGCAGAACAGAGGTGGTGGTGGTGTCCCCGCCATGGGCAAGCA
GAAGGCGGCCATGGCCGGCAAGCCCGACCCCAAGAACACCCGCCGCGCCCTGGGCGACAT
CGGCAACGTTGAGGCCATCAACCGGCGCGCTCCCCCCCTGGGCGACATCGCCAACGTCGT
CAACGTCCGCGCGGCCGATGGGAAGTCGCAGCTCCATGAGCCCGTGAACCGCCCCGTCAC
GAGAAACTTCGGCGCTCAGCTCCTCAAGAACGCCCAGGAGAAGGCCAAGAATCCGGCGGC
GAGACCTGCGCTGCGGAGGGCTCATGTCAAGCCCGCCCCTCCTCCACCAGAGCACGTGAT
CGAGATCAGCTCCGACACCGACGTGACCAAGTCGGAGGCCAGCAGCGTCAGCTCCGTCCG
CAAGTACTCGAGGAAGAAGGTGGTCACCACCCTCAGTCACGTGCTCTCGGCACGCTCCAA
GTTTGCAGCTGGAATCACCGAAGAACCAGTGATCCAGGACATCGACAAGCTTGACGGCGA
CAACCAGCTCGCCGTCGTTGATTACATCGAAGATATCTACAAGTTTTACAAGGTGGCCGA
GAATGACTGCCGCGCCGGAGACTACATGGGCTCGCAGGTGGAGATCAACGCCAAGATGAG
GGGCATCCTGGTGGACTGGATCCTGGAGGTCCACCAGAAATTTGAACTCATGCCGGAGTC
GCTCTATCTGACAGTCTACATCATAGATATGTATCTGTCACTGCAGCCCGTGCTCCGGCG
GGAGCTGCAGCTGGTGGGCGTCTCGGCCCTCCTGATTGCCTGCAAGTACGAGGAGATCTG
GGCTCCTGAGGTGAATGATTTCATACTTATCTCCGACAGCGCCTACACGAGGGAGCAGAT
TCTTAAGATGGAGAAGGCGATCCTCAACAGGCTCGAGTGGAACCTGACTGTGCCCACGCT
CTACGTCTTCCTCGTGCGCTTCGCCAAGGCCGCGTCTTCCTCCACAGACCACAAGAACGA
CAAGGAGATGGAGAACACCGTCTTCTTCTTCGCGGAGCTGGCGCTCCTGCAGTACGGGCT
GGTGCAGTCCAAGCCGTCCATGGTCGCCGCCGCTGCTGTCTACGCCGCCAGGCTCACCCT
CAACAAGACCCCGCTGTGGACCGACACCCTGAGGCACCACACTGGCTTCACTGAAGCGCA
GCTGATGGATGCCGCCAAGATCCTGGTGGCCTCGCACTCGACCGCGCCTGACAGCAAGCT
GAAGGTCGTCTACAAGAAGTACTCCAGCGAGAAGCTCGGAGGAGTCGCGCTGCGCCCGCC
TGCGACCGACCTGTGCAAATGATCTGTCGTCTGTTTGTTGTTTTGGTTTGCAAGACTTGG
GAGTGATGATGGAAGGCTTGTCTGACATTTCGCCGTGTTTGTTTGTTTGGTCGCAAGTCA
GGCATATTATCTGACTTGTTGATAAACTATTATTAGGATTTGCGTGATAAAATACACCTT
GGTCTTGGTGTATATATATGTCTTCTGAATGTTTGTGTACGACAGTTATTCAATATTTTG
AATAATCTTTGATGTCTGCCATTCTGAATTTCCTCCTTATATCTGAACCACAGTTGTTCA
TCATAATTTTCATCTGAATATGAAGTTTGCATGCAAGCAGAATATTTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_17311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59120.1	450	2e-167	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi2g52760.1	447	0.0
Arabidopsis v10	AT5G06150.1	445	2e-103	\| Symbols: CYC1BAT, CYCB1;2 \| Cyclin family protein \| chr5:1859542-1861570 REVERSE LENGTH=445