barSeed - Barley Seed Development Database

Probe CUST_25263_PI390587928

Source Contig U35_17318

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25263_PI390587928	Hv_44K_v2	TTTCTGTATGTGAACTTGTCGTCGAATGCTGCGGCTGCGCTACTACTATACTTTACGCTT	681	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.230	1.248	1.152	1.025	0.460	0.365
Raw	15167.200	23885.303	19437.233	26497.157	4258.520	3662.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_26269.1	1287	4e-23	907 - 966	98	59 / 60	plus
Harvest21	ABC07365	781	3e-25	682 - 741	100	60 / 60	plus	ABC07365
Harvest35	U35_17318	760	3e-25	682 - 741	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_17318 760 Hv_44K_v2
TCCTCCTCCCCATTGTCGCGAGAAACCCTCGTCCCTTCCTATCCTACCTCCCTCCCATGG
CGGAGTCGTCCGAGAACGCCGCCGCGGCGCCCGCGCCACCCGCCGCCCCGGCCCCGGCCC
CGGTCCCGTCGCCGGCGCCGAAGACGTCCCCGCCCGCCAGCTCCGGGATCCCGCCGCGGT
ACGACCTGGATGCCAAGTGGGACGCCTGCCTCGACCTCTCCATCCGCCGCGTCGCCTACT
CCTCCCTCGCCGGCGCCTTCGGGGGCCTCATCCTCTTCCGTAGCCCAACAACCCGCTGGG
CATCAGTTGCACTTGGAGCTGGTGTGGGGATAGGGGCTGCGTTCACTGAATGCTCATACA
TATTCAATGGTTCTCCTCCAAAGTGGTCGGCCAAAGCTGCGACTGTTGCTGCTCATTCTG
AAGGGGGAGACAAGTAAACACTGTGGGCTGGACCAATAGTGTAGTCCAATCTTGGTGGAG
TTTTGGAGTGTCTTGATTGAACCTAGTTGCCGTTTCATGGCTGATATCGCCACTTGTCAT
AGTATCTCCTGAAAGTTAGCATGTGGCCCTCGTGAATTTTCTTCACACATTACCGAAAAC
CATTCCTGACTGCGGTCTGATGATGACCCTATGGCTGCGTGAGCTTGGTCAGTCCTGAGG
TTTTTATGTCCGGCAATAAATTTTCTGTATGTGAACTTGTCGTCGAATGCTGCGGCTGCG
CTACTACTATACTTTACGCTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None