barSeed - Barley Seed Development Database

Probe CUST_25262_PI390587928

Source Contig U35_17319

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25262_PI390587928	Hv_44K_v2	CAACCACGAGAGGCAACCGAGGCAGATAATAATAATAATAATAAGCCTCCTTTATTCAAA	742	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.212	3.231	1.216	0.836	0.389	0.320
Raw	75.928	121.333	38.996	41.824	6.298	6.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (816 bp)

>U35_17319 816 Hv_44K_v2
GCTCGCTCCGACCGCCTCAGCTCCAACCCGTTCCTCGATCGATCGGATTCGACTGCGTGC
CACCGCTGATTCGCCGGGGAGCGACCATGAGCGAGGTCTTCGAGGGCTACGAGCGGCAGT
ACCGCGAGATCTCCGCCGCCCTCTCCCGCAAGTGCGCCGCCGCCTCCACCCTCGACAGCG
AGAAGAAGAAGCAGAAGCTGTCCGAGATCCAGGCCGACCTGCAGGAGTCTGAATCGCTGA
TCAGGAGGATGGATTTGGAGGCCCGGAGCCTGCAGCCGACCGTCAGGGCCGGGCTGCTGT
CTAAACTGAGGCAGTACAAGTCTGATCTCAACAACATCAAGAGCGAGATCAAGAAGGTCT
TGGCGCCTAATGCCCAACAGGCCACCCGGGAGGAGTTCCTCGACTCCGGCGTGTCAGATA
CACTCGCGGCGTCATCTGATCAAAGAGAAAAATTGATGGGGACATCAGAAAGGTTAAACC
AGTCTTCTGACAGAATTAGAGAAAGCCATGGAACAGTATTAGAGACAGAAGAAATCGGCG
TGTCAATTCTTCAGAACCTTCATAATCAACGACAGAAACTGCTGCATGCTCACACAACAT
TGCATGGTGTGGACGACTCCATCGGCAAAAGCAATAAGATCCTAACGTCCATGTCAAAGT
GGAACAAGTGGTTTGTCTAGGTTGACTTCATGTTAAAGAAAGCTAGGAAGTATGTATTGG
ATGATGATTTAAAATATGTTAGCAACCACGAGAGGCAACCGAGGCAGATAATAATAATAA
TAATAAGCCTCCTTTATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17319 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51120.1	222	1e-98	protein\|vesicle transport v-SNARE protein, putative, expressed
Brachypodium v1_2	Bradi2g18180.1	222	4e-106
Arabidopsis v10	AT5G39510.1	221	1e-77	\| Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1 \| Vesicle transport v-SNARE family protein \| chr5:15822035-15823591 FORWARD LENGTH=221