barSeed - Barley Seed Development Database

Probe CUST_25258_PI390587928

Source Contig U35_31613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25258_PI390587928	Hv_44K_v2	TTCTCACGGCCAGGGACGAGAAGAGAGGGAAGGATGCCGTTGAGTCTATTCGCCGTGAAT	221	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32111.1	1984	2e-24	396 - 455	100	60 / 60	plus	None
MLOC	MLOC_32111.2	1419	2e-24	390 - 449	100	60 / 60	plus	None
JLOC1	JLOC1_21007.2	1438	8e-25	381 - 440	100	60 / 60	plus
JLOC1	JLOC1_21007.1	1336	8e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_31613	281	3e-25	222 - 281	100	60 / 60	plus

Contig Sequence (281 bp)

>U35_31613 281 Hv_44K_v2
ACTCCCACCGCAGCATCTTCATTCCTCTTCCCTCGCCTCGCCGTCTCCGACCCAGCCGTC
CTAGCCGCCCACCGCAACTCCGCAAGCCATGGAGAAGCCGTCGCACATAGCCACCGCCGA
CGGGAAGCAGCCATCGCGCAGGCTTGCGGTGGTCACTGGTGGAAACAAGGGAGTCGGCCT
GGAGGTGTGCCGGCAGCTTGCTGTCCAAGGTGTAACGGTCATTCTCACGGCCAGGGACGA
GAAGAGAGGGAAGGATGCCGTTGAGTCTATTCGCCGTGAAT

Homology of Contig U35_31613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None