barSeed - Barley Seed Development Database

Probe CUST_25250_PI390587928

Source Contig U35_31617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25250_PI390587928	Hv_44K_v2	CACCGTCGGCGACTTCGCCACGGAGACGCTCACGCTCGGCGACTCCGCGCCGGTCTCAAC	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376053	2060	7e-23	872 - 932	98	60 / 61	plus	ABC11988
MLOC	MLOC_13816.1	1829	7e-23	786 - 846	98	60 / 61	minus	ABC11988
JLOC1	JLOC1_9391.1	2145	4e-23	940 - 1000	98	60 / 61	minus
Harvest35	U35_31617	427	3e-25	368 - 427	100	60 / 60	plus

Contig Sequence (427 bp)

>U35_31617 427 Hv_44K_v2
TCCCCCGCGCCGACCTGAGGCCTGCCAACGCCACGCCGGTCTTCGAGGCGTCGGCGGCGG
AGATACAGGGCCCCGTGGTGTCCGGCGTGGGGCAGGGCAGCGGCGAGTACTTCTCCCGCG
TCGGCGTCGGCCGCCCCGCGCGGCAGCTCTACATGGTGCTCGACACCGGCAGCGACGTCA
CCTGGCTGCAGTGCCAGCCCTGCGCCGACTGCTACGCCCAGTCCGACCCCGTCTACGACC
CCTCCGTCTCCACCTCCTACGCCACCGTCGGCTGCGACTCCCCGCGCTGCCGCGACCTCG
ACGCCGCCGCGTGCCGCAACTCCACGGGCTCCTGCCTCTACGAGGTGGCCTACGGCGACG
GCTCCTACACCGTCGGCGACTTCGCCACGGAGACGCTCACGCTCGGCGACTCCGCGCCGG
TCTCAAC

Homology of Contig U35_31617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04710.1	505	3e-72	protein\|aspartic proteinase, putative, expressed
Brachypodium v1_2	Bradi2g02660.1	530	2e-57
Arabidopsis v10	None