- Probe CUST_25246_PI390587928
- Source Contig U35_50251
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25246_PI390587928 | Hv_44K_v2 | TATGTTCACATGGTGAACTGGTAGTTATTAGAGGTGGTCATGCAGCAACGATAGCCGTCT | 428 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.629 | 0.755 | 1.779 | 1.619 | 1.120 | 0.934 |
| Raw | 11.477 | 22.088 | 45.942 | 65.609 | 16.631 | 14.343 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371247 | 1405 | 2e-24 | 542 - 601 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.4 | 1338 | 2e-24 | 1020 - 1079 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.1 | 4100 | 2e-24 | 1646 - 1705 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.10 | 2798 | 2e-24 | 266 - 325 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.11 | 2801 | 2e-24 | 269 - 328 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.2 | 3964 | 2e-24 | 1631 - 1690 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.3 | 2720 | 2e-24 | 1631 - 1690 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.6 | 3867 | 2e-24 | 959 - 1018 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.7 | 3864 | 2e-24 | 956 - 1015 | 100 | 60 / 60 | plus | ABC08992 |
| MLOC | MLOC_54679.8 | 3138 | 2e-24 | 1474 - 1533 | 100 | 60 / 60 | plus | ABC08992 |
| JLOC1 | JLOC1_35203.9 | 2727 | 8e-25 | 451 - 510 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35203.8 | 1480 | 8e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35203.7 | 2724 | 8e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35203.4 | 3319 | 8e-25 | 1052 - 1111 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35203.3 | 2180 | 8e-25 | 1148 - 1207 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35203.1 | 1579 | 8e-25 | 547 - 606 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52316 | 544 | 3e-25 | 429 - 488 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50251 | 544 | 3e-25 | 429 - 488 | 100 | 60 / 60 | plus |
Contig Sequence (544 bp)
>U35_50251 544 Hv_44K_v2 CACCCGGCTCTGCCTCCCACTCCGCTCATGCGCCCCTCCGCGGCGGCGGCCGCCGCCTTC CTCGCCTCGTCGTCACGGCCTCCAGCCGCCTGGTTCTGCTCCGGCGGGCGAGGCGCTTCG CTGTACGCTGCTTCATCTCCCCTCCCGCGTACTCGCCCTCCAAGACTGGGAAGTGGCAGT GGACATTTGAAAATAACAATGGAGGAATGGAGGGTGGTCGCCAAAGCTATTGTGACACGG AAAGGAGAACTCACGCACCGTGCTACTGTTGTTGATTGGCCTGGTTTGGGTTATTCAGAC AGGCCTCACTGAACTATAATGCTGATGTGCTGGAGAATTTTCTGGTTCAGCTACTGAATT CACCAAATAGTCCTCTGGCCAATGCAGTAGGACTTAATGATGTGGTTATACACTTGTATT GTCCACACTATGTTCACATGGTGAACTGGTAGTTATTAGAGGTGGTCATGCAGCAACGAT AGCCGTCTGTGCGGCTGGGAAGGACCTTATCAGACCATCAGCGGTTGCTGCTGTTGCACC TACT
Homology of Contig U35_50251 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |