barSeed - Barley Seed Development Database

Probe CUST_25245_PI390587928

Source Contig U35_50253

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25245_PI390587928	Hv_44K_v2	CTTCACTCATCAGTTTCAATCCCAATCATCCATAGAGATATCAAGTCTAGTAACATACTT	578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65440.5	1231	2e-24	576 - 635	100	60 / 60	plus	None
MLOC	MLOC_65440.2	2509	2e-24	1690 - 1749	100	60 / 60	plus	None
MLOC	MLOC_65440.3	2941	2e-24	1384 - 1443	100	60 / 60	plus	ABC13539
JLOC1	JLOC1_43064.1	2216	8e-25	1338 - 1397	100	60 / 60	plus
Harvest21	ABC52321	641	3e-25	579 - 638	100	60 / 60	plus
Harvest35	U35_50253	641	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_50253 641 Hv_44K_v2
AGTCTGCGGCTACAGGAACAAGCATTGGTATAGGAGTAGGCAGTGCAGTAGGATTTATGC
TTTTGGTTCTCGGGGCAATCTTCATGGTCCAAAGGTTTCAACATAAGAGAGAGATGTTGT
TGAAACAAAAGTTTTTCAAGCAAAATCGTGGACAGTTGTTGCAACAATTAGTCTCCCCAA
GGACTGACATTGCAGAAAGGATGATCATTCCAGTTGACGAACTTGCAAAGGCAACCAACA
ACTTTGACAAAGCACGTGAGCTTGGTGGTGGAGGCCACGGTACAGTCTACAAAGGGATTT
TATCAGACCTACATGTTGTGGCCATTAAGAAGTCAAAGATCACAGTACAAAAAGAGATAG
ATGAGTTCATAAATGAGGTAGCCATCCTGTCACAGATCAATCACAGGAACGTAGTGAAGC
TTATTGGATGCTGCCTAGAGACGGAGGTACCATTGCTGGTTTATGAGTTTATTTCTAGTG
GGACCCTCTATGACCATCTCCATGTTGAAGGGTCAAAATCCCTCCCATGGGTAACTAGGT
TTAGGATTGCAACAGAAATTGCAAGTGCTCTTGCATATCTTCACTCATCAGTTTCAATCC
CAATCATCCATAGAGATATCAAGTCTAGTAACATACTTCTG

Homology of Contig U35_50253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38830.1	623	4e-108	protein\|OsWAK89a - OsWAK receptor-like protein kinase, expressed
Brachypodium v1_2	Bradi3g01157.1	729	5e-103
Arabidopsis v10	AT1G21270.1	732	7e-67	\| Symbols: WAK2 \| wall-associated kinase 2 \| chr1:7444997-7447345 FORWARD LENGTH=732