barSeed - Barley Seed Development Database

Probe CUST_25237_PI390587928

Source Contig U35_50267

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25237_PI390587928	Hv_44K_v2	TCACTACATGCTAGAGAGGAGATAATATTTGAACTGCTCGAGTATTTGAGGGGAACCGCC	401	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39100.1	894	2e-24	806 - 865	100	60 / 60	minus	ABC43750
JLOC1	JLOC1_25480.1	1181	8e-25	359 - 418	100	60 / 60	plus
Harvest21	ABC52340	615	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_50267	615	3e-25	402 - 461	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_50267 615 Hv_44K_v2
TGTTCGAGCTATTGGGCCAGTCCGTGGGCGATCCGGCCGGCGACGAAGATGACATTCCGA
TCGTGCTCCGTGCATGGCAGGCTCAAAATTTTCTTATAACAGCGCTTCATGTGAAAGCTT
CTGCACCCAACATTAACGTCATAGGGGTTACAGAGGTTCAGGAGCTTCTTTCTGCATGTG
GAAGTACAGCTCCTAAAAGTATCCATGAAGTTGTGGCGCATTTGGCTTCCCGCCTTGCTC
GATGGGATGACAGATTGTGGCGCAAATACGTGTTTGGTGCAGCCGATGAAATTGAAGTTA
AATTTGTCAACAGGAGAAATCAAGAAGACCTAAACCTGCTGTGCATAATATTTAACCAAG
ACATTAGAAGGTTAGCCACTCAGGTTATCAGGGTGAAATGGTCACTACATGCTAGAGAGG
AGATAATATTTGAACTGCTCGAGTATTTGAGGGGAACCGCCACGAGGTCCTTGCTCGAAG
CTATCAGGAAAGACACGAGGCAAATGATTGAAGAGCAAGAGGCTGTCCGTGGCCGGTTGT
TCACCATCCAGGATGTGATGCAGAGCACTGTGCGTGCCTGGTTGCAGGATAAGAGCCTTC
GCATCACGCATAACC

Homology of Contig U35_50267 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g41720.1	576	2e-120	protein\|expressed protein
Brachypodium v1_2	Bradi2g42730.1	553	1e-130
Arabidopsis v10	AT1G29820.1	540	1e-101	Magnesium transporter CorA-like family protein \| chr1:10438219-10440625 FORWARD LENGTH=540