- Probe CUST_25233_PI390587928
- Source Contig U35_50273
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25233_PI390587928 | Hv_44K_v2 | GCAATTTAGCGAGTTGGAAGAAAGCTTGAAGGAGGCTTTCTTGATGCCATTCACTACTAT | 620 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.127 | 1.379 | 2.242 | 1.502 | 0.716 | 0.637 |
| Raw | 11.250 | 21.042 | 30.035 | 33.324 | 3.423 | 3.273 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68157.2 | 2951 | 2e-24 | 1797 - 1856 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.3 | 2736 | 2e-24 | 1582 - 1641 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.1 | 2844 | 2e-24 | 1690 - 1749 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.4 | 2938 | 2e-24 | 1784 - 1843 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.5 | 2857 | 2e-24 | 1703 - 1762 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.10 | 2040 | 2e-24 | 1407 - 1466 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.11 | 2041 | 2e-24 | 1408 - 1467 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.9 | 2620 | 2e-24 | 1412 - 1471 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.7 | 2941 | 2e-24 | 1782 - 1841 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.8 | 2424 | 2e-24 | 1406 - 1465 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68157.6 | 3031 | 2e-24 | 1994 - 2053 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_45068.5 | 2480 | 8e-25 | 1261 - 1320 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45068.4 | 2833 | 8e-25 | 1614 - 1673 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45068.3 | 2542 | 8e-25 | 1405 - 1464 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45068.2 | 2675 | 8e-25 | 1456 - 1515 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45068.1 | 2768 | 8e-25 | 1549 - 1608 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52351 | 680 | 3e-25 | 621 - 680 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50273 | 680 | 3e-25 | 621 - 680 | 100 | 60 / 60 | plus |
Contig Sequence (680 bp)
>U35_50273 680 Hv_44K_v2 ACTGCCAATGGGATGGAATCTAGCTCCGAGGATGAGTTTATGAGCCTTTTGTTTGGGACA CATACAAGTCCGGCTCTACATCAATTTCTAGTCAACTCTCTTGGTGAAGCGGGTCTCAAG AGGATAGCTAAGACTATTGAAAGTGCTGGAAAGGAACTTCGTATTGTTGTCAGTGAGCAT CTTCAGCCTGCAGTAGAAATTATTTCATTCAGACTTGCAGAACTGAGAGGTCTTGCAAGA TGGCGTTCACGATTTCAGAACATTGGGTTAGATGAAAAGCTTATGGATGGTGTAACTGAG AGGGCAGGGATGCTAGTTGTGCAAGTTGAGCGCTTTTCAAGGGTTGCAGCAACTGTTCTT TATCTGTTTCAAAATTTCTTCAGCTGGGTTTTGAAGTGTGTTAAGATATTGTTAAGTGAA CCAACCGACCAAGTTCCATCCACAAACAGTGAACTTGTGGTGATTTTTCTGAAGTTTCTT CTTGACAAAGATCCAATCAAACAGTTACTTGAAACAGATCAGATATTTGAGTGGGATATT GATACTGCGAAACATGTTGAGCAGCTAGTAGTTTTTGGAGGATTTACAGACACTCAATTT TTGGAGAGGAGTTTGGCCAAGCAATTTAGCGAGTTGGAAGAAAGCTTGAAGGAGGCTTTC TTGATGCCATTCACTACTAT
Homology of Contig U35_50273 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g54490.1 | 785 | 1e-117 | protein|nucleotide binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g60190.1 | 775 | 1e-138 | |
| Arabidopsis v10 | AT4G21530.1 | 777 | 5e-80 | Transducin/WD40 repeat-like superfamily protein | chr4:11450743-11455862 FORWARD LENGTH=777 |