barSeed - Barley Seed Development Database

Probe CUST_25226_PI390587928

Source Contig U35_50286

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25226_PI390587928	Hv_44K_v2	CCATTGTTTTTGGCTAGTAAATTCAGAGGTGCTGATGTCCACATTGTGGAGATCGACCCA	465	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.887	1.970	3.694	2.834	0.776	0.714
Raw	7.943	28.933	45.030	57.715	2.929	3.790

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65442.1	1579	2e-24	840 - 899	100	60 / 60	minus	None
MLOC	MLOC_65442.3	1489	2e-24	782 - 841	100	60 / 60	minus	None
MLOC	MLOC_65442.2	1760	2e-24	784 - 843	100	60 / 60	minus	None
JLOC1	JLOC1_43066.1	1556	8e-25	671 - 730	100	60 / 60	plus
Harvest21	ABC52367	637	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_50286	637	3e-25	466 - 525	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_50286 637 Hv_44K_v2
TGGTGGGGCGAGGACGACGGGCCCGGCGACGGAGCTCACACCGTCTTCCGCCGCCACTCC
GAGCACGGCAATGGCGTCGTCTCCGTCGCCGCATACCCAGCCTCCATACCGGCCAGCGAT
CAGTGGCCGGTGATGGAGAGATGGCTTCAAGAAAGAAACTTGGCAATGTACCCAGAATCA
AGTGGTGCTGACCAGTTTAAGATACTAGGCTACCAGTGGCGAGTAATGCGCTTTAACGAT
CATACACGGCAAAGTACTGCAAAAGTAATGGCGTGTTACCGGTCTGGGGGCGATAGAGCA
TTATACTCAATGCAGCAACCCAATTGTTTAGCTGTTCCTTATGTCAAGAGCATGGTATCA
GCAGGGTTGACAGCACTCCCTAGTTGTTCTTATGATCTCCCTCGAGCAGTTTCTGAGCCG
AACACTATGAAAATTCTCTGTATCGGTCATGGTGGCGGCAGCATACCATTGTTTTTGGCT
AGTAAATTCAGAGGTGCTGATGTCCACATTGTGGAGATCGACCCAGTCGTCGTTTCAGCC
TCGGTCGAATCCATGGGCTTTCCCGCCTCATGCGCGAAAGGGCTATCAGACCACACCATG
CAGCCCGCCGACGGCGACGAGCTGCTATGGAACGGCG

Homology of Contig U35_50286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43164.1	435	4e-120	protein\|expressed protein
Brachypodium v1_2	Bradi5g15402.1	433	6e-139
Arabidopsis v10	AT4G13330.1	428	2e-63	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:7754248-7755837 REVERSE LENGTH=428