barSeed - Barley Seed Development Database

Probe CUST_25222_PI390587928

Source Contig U35_50293

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25222_PI390587928	Hv_44K_v2	TGGTGATTCCATTAGTGTATTGTTTTGTGATGACCTTACTTGCTAAGGATAACGAATTTG	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35750.1	1502	2e-24	1047 - 1106	100	60 / 60	plus	None
Harvest21	ABC52375	615	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_50293	615	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_50293 615 Hv_44K_v2
GACTTCTTGCGGAAAACAACACTGGAAAGTTACTCTGGCAAGTCTTTGGCATCCAAGCTG
CGTCGTTGTGCCTCTTTGGCATCCAAGAGCATGAAGATATTATGTGGGATGCATTCCAGC
GTTCAGGTAATCTCAAACCCACCTTTGATAAACAAACATGTGGATTCGTTCTTGGGACGA
AAGCTTCTAGACCTTAACCATGTCTGTTCAGATAGGGTCACTTGCTATGTTTAATTTCGA
TTTACTTTATTTGCCTTGCCTAGTATGGACTCTTTGGTATGAATCCGAGGTCGGGCGCCT
CTGCCTGCCATCAGGGCTCTCCTCCTTTGCTGTGGAGGGAGGCTCTAAGGTCTATTTGAA
ATGACGGAAAGAGACTAGAAATCTTGCTTGTTCTTTGTTTAATCGATGGTCCATCCATAC
ATAGATGGATGCTAAAGTAGTCAGTGCAAGCAGTAGTTGATCTACCTTTTGCTGCTTTTG
ATCCCACATCCTTAGCAGCTTGAAACTGAACAAATGACATCCAAGGCTACCTTTTGTTTG
GTGATTCCATTAGTGTATTGTTTTGTGATGACCTTACTTGCTAAGGATAACGAATTTGCT
TGATATATTGAACAG

Homology of Contig U35_50293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None