barSeed - Barley Seed Development Database

Probe CUST_25221_PI390587928

Source Contig U35_50294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25221_PI390587928	Hv_44K_v2	GTTTGCATTGTATGCTGATGGTTCTGGACTCGTGTTTGGCTTATAATCTAGTATTTTCTG	575	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.176	1.337	1.271	0.948	0.368	0.381
Raw	22999.033	40073.000	33754.567	38961.867	5464.847	6088.297

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361772	496	2e-24	437 - 496	100	60 / 60	plus	ABC04257 ABC29361
MLOC	MLOC_39723.1	1123	2e-24	800 - 859	100	60 / 60	plus	ABC04257 ABC29361
JLOC1	JLOC1_25916.1	983	8e-25	800 - 859	100	60 / 60	plus
Harvest21	ABC52376	638	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_50294	638	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_50294 638 Hv_44K_v2
AATTGCCTGACGCAAAGGATGCCAAGGTCAACCTGGAACCTGATGGTGTATTCTCTTTCT
TTGCCACTGCTGGAACTGATGGGAACTCATATGAATCGAAACTGGATTTGAATGACAAAG
TGAACGTCGAGGCAAGCAAAGTAAGTGTTGGTGTCAGGTCTATATTCTGTATTTTGGAAA
AAGCCGAGGCCAAATGGTGGAATAAGCTTGTTCGAGATGATCAGAAGGCACCACACTTCG
TGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGATGATGGTGCTGATGTTAATGTTG
ATGGGATGGACTTTTCGAATATGGGTGGCATGGGTGGTATGCCAAATCTCCCAGGAGGTG
GAAGGCAAAGCTGGCCCACCAGCTCAGAGCAACTGAAAGCATTCCACTCAATAATCCCTA
CTCGATTGTATCCTAGCATTTTTTTATGAACGTGCTGAACTGAAGACACATTCTGCTCGC
TGGTTGGGGTTGGTGTCTCGTGTAAGTTGTTGACTTAATACTTGTTTCCAACTATGCATC
GTACCGTCTGTTGGCATATTATGAGTTGTGAGATTGTTTGCATTGTATGCTGATGGTTCT
GGACTCGTGTTTGGCTTATAATCTAGTATTTTCTGAAC

Homology of Contig U35_50294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None