barSeed - Barley Seed Development Database

Probe CUST_25215_PI390587928

Source Contig U35_15902

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25215_PI390587928	Hv_44K_v2	TTTCTTGCGCCTAGTAGTCTGTCTGCCCGCCAGATCTGCATCCGCGGAGATGAAGATCAC	115	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375093	3219	2e-24	1568 - 1627	100	60 / 60	plus	ABC06769 ABC06770
MLOC	MLOC_63687.1	1383	2e-24	194 - 253	100	60 / 60	plus	ABC06769
JLOC1	JLOC1_41744.1	1365	8e-25	171 - 230	100	60 / 60	plus
Harvest21	ABC06769	1680	3e-25	79 - 138	100	60 / 60	plus	ABC06769
Harvest35	U35_15902	997	3e-25	116 - 175	100	60 / 60	plus

Contig Sequence (997 bp)

>U35_15902 997 Hv_44K_v2
TCGAGCACTGTTGGCCTACTAGAGCTCTCCACCAAGAGCTACCAAACGCCCTGCTTTAAT
TTTAATCATCGCCGCTGTTGCTTCTCCCACGCGCGTTCCACGTACATCGCTCGTTTTTCT
TGCGCCTAGTAGTCTGTCTGCCCGCCAGATCTGCATCCGCGGAGATGAAGATCACGGTAC
GGGGATCGACGGTCGTGGTGCCGGCGGAGGAGACGCCGCGGCTCCGGCTGTGGAACGCCA
ACCCGGACCTGGTCGTGCCGCGGTTCCACACCCCGAGCGTCTACTTCTTCCGGCGCGGCG
CGGGGGAGGAGGAGGCGGACCGCTACTTCGACGCGGAGCGGATGCGCCGGGCGCTGGCGG
AGGCGTTGGTGCCCTTCTACCCGATGGCGGGGCGGCTGGCCCGCGACGAGGACGGGCGCG
TGGAGATCGACTGCAACGCGGAAGGGGTGCTCTTCGTGGAGGCCGACGCGCCCGACGGCA
CCGTCGACGACTTCGGCGACTTCGCGCCCACCATGGACCTCAAGCGCCTCATCCCCGCGG
TCGACTTCACCGGGGGCATCTCCTCCTACCCGCTCCTCGTGGCCCAGGTGACCCACTTCA
AGTGCGGAGGCGTCGCCCTCGGCATAGGCATGCAGCACCACGTCGCTGACGGCTTCTCCG
GCCTGCACTTCATCAACTCATGGGCCGACCTCTGCCGCGGCGTGCCGATTGCCGTCATGC
CGTTCATTGACCGCACCCTCCTCCGCGCACGCGACCCGCCGACCCCGTCCCACCCGCACA
TCGAGTACCAGCCCGCGCCCGCCATGCTGGACTCGGAGGAGCCGCAGGCCCTCACCGCCA
AGCCGGAAGCGCCACCCACGGCTGTGGACATCTTCAAGCTGTGCCGCGCCGACCTCGGCC
GCCTCCGCGCCCAGCTCCCCACGGGCGAGGGCGCGCCGCGGTTCAGCACCTACGCGGTGC
TCGGGGCGCACGTGTGGGCGGTGCGCGTCCCTGGCCC

Homology of Contig U35_15902 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39850.1	443	2e-158	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi3g48530.1	443	8e-168
Arabidopsis v10	AT5G48930.1	433	7e-102	\| Symbols: HCT \| hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase \| chr5:19836654-19838092 REVERSE LENGTH=433