barSeed - Barley Seed Development Database

Probe CUST_25214_PI390587928

Source Contig U35_15903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25214_PI390587928	Hv_44K_v2	CCACTTTGGGCAAGACGAATTTTGTGCATCTTTATCAAATTTCCGACAAATGTATCTATT	909	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375093	3219	2e-24	3071 - 3130	100	60 / 60	plus	ABC06769 ABC06770
MLOC	MLOC_54268.3	1343	2e-24	1038 - 1097	100	60 / 60	plus	ABC06769 ABC06770
MLOC	MLOC_54268.5	1631	2e-24	1521 - 1580	100	60 / 60	plus	ABC06769 ABC06770
MLOC	MLOC_54268.2	1831	2e-24	1721 - 1780	100	60 / 60	plus	ABC06769 ABC06770
MLOC	MLOC_54268.4	1927	2e-24	1622 - 1681	100	60 / 60	plus	ABC06769 ABC06770
JLOC1	JLOC1_34924.2	3566	8e-25	3271 - 3330	100	60 / 60	plus
JLOC1	JLOC1_34924.1	1517	8e-25	1222 - 1281	100	60 / 60	plus
Harvest21	ABC06770	526	3e-25	107 - 166	100	60 / 60	minus	ABC06770
Harvest21	ABC06769	1680	3e-25	1582 - 1641	100	60 / 60	plus	ABC06769
Harvest35	U35_15903	1209	3e-25	910 - 969	100	60 / 60	plus

Contig Sequence (1209 bp)

>U35_15903 1209 Hv_44K_v2
AGCTCTCCACCAAGAGCTACCAAACGCCCTGCTTTAATTTTAATCATCGCCGACCCCGTC
CCACCCGCACATCGAGTACCAGCCCGCGCCCGCCATGCTGGACTCGGAGGAGCCGCAGGC
CCTCACCGCCAAGCCGGAAGCGCCACCCACGGCTGTGGACATCTTCAAGCTGTGCCGCGC
CGACCTCGGCCGCCTCCGCGCCCAGCTCCCCACGGGCGAGGGCGCGCCGCGGTTCAGCAC
CTACGCGGTGCTCGGGGCGCACGTGTGGCGGTGCGCGTCCCTGGCCCGTGGCCTGTCCCC
AGAGCAGCCCACCAAGCTGTACTGCGCCACGGACGGGCGGCAGCGGCTGCAGCCCGCGCT
CCCGGAGGGCTACTTCGGCAACGTCATCTTCACCGCCACGCCGCTCGCGGTGGCGGGCAA
GGTGACTGGCTCGCTGGCGGACGGCGCGACCACGATCCAGGCGGCGCTGGAGGTGATGGA
CAACGAGTACTGCCGCTCGGCGCTGGACTACCTGGAGATGCAGCCTGACCTGTCGGCGCT
GGTCCGCGGCGCGCACACGTTCCGGTGCCCCAACCTCGGGCTCACCAGCTGGGTGCGCCT
GCCCATTCACGACGCCGACTTTGGCTGGGGCCGGCCCGTGTTCATGGGCCCCGGCGGCAT
CGCGTACGAGGGGCTCGCCTTCGTGCTCCCCAGCGCCAGCCGCGACGGCAGCCTGTCGGT
GGCCATCTCGCTGCAGGCCGAGCATATGGAGAAGTTCCGGAAGATGATCTTTGACTTCTG
ATCAAAGGAATAAAACAAGCGTCCAGCGCGCAACGCAGAAACAAACAAGCAGCACCGGAG
TAATTGTAGGATGCAGCAATGATTCTTTGATTACACACGTAGTTCCTGCACGTTTTCCCT
TCCCTCTTTCCACTTTGGGCAAGACGAATTTTGTGCATCTTTATCAAATTTCCGACAAAT
GTATCTATTTAATGAACATGTCAATGCATGCAAACATATGAAGTTTTTTCTTTTGCGGGT
GATGAAAAAAAAAAAAAGCGCTCTTGCGCACGCCTTGGAAACTTGGAGATAATTACCTAC
TGCCACCGCCATCGTCCTCCAAACATGCCCATCTAGATTATTACCTTNGTAGTTAAAAAA
CAGAGGACATACANGTCATTGTACAATATAAAACCTGGATTGCAGTTTATATAAAAAAAA
AAAAAAAAA

Homology of Contig U35_15903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39850.1	443	1e-147	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi3g48530.1	443	7e-152
Arabidopsis v10	AT5G48930.1	433	1e-88	\| Symbols: HCT \| hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase \| chr5:19836654-19838092 REVERSE LENGTH=433