barSeed - Barley Seed Development Database

Probe CUST_25212_PI390587928

Source Contig U35_15905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25212_PI390587928	Hv_44K_v2	AGCTGTAATATGTATAGTCGATTAAATGAGCCGTGAGGCAGAATTTTCTTGGCTAAAAAA	1723	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357165	1906	9e-22	1737 - 1791	100	55 / 55	plus	ABC05301
JLOC1	JLOC1_9335.1	1373	5e-22	1126 - 1180	100	55 / 55	plus
Harvest21	ABC05301	1785	3e-25	1716 - 1775	100	60 / 60	plus	ABC05301
Harvest35	U35_15905	1829	3e-25	1724 - 1783	100	60 / 60	plus

Contig Sequence (1829 bp)

>U35_15905 1829 Hv_44K_v2
CACAATCCCGCAGAAACAATCCAGCCCCCAAAACCCCACCGCCCCGCGGCGGCGGCGTCG
CGATGGAGCCCTCCTCGGCCGGCGCCGGCGGCAACTCGCTGCCGTCGGTCGGCCCCGACG
GGCAGAAGCGGCGCGTGTGCTACTTCTACGACCCGGAGGTGGGCAACTACTACTACGGGC
AGGGCCACCCGATGAAGCCGCACCGCATCCGCATGACCCACTCGCTGCTGGCGCAGTACG
GCCTCCTCGACCAGATGCAGGTGCTGCGCCCCAACCCCGCCCGCGACCGCGACCTCTGCC
GCTTCCACGCCGACGACTACATCTCCTTCCTCCGCTCCGTCACGCCCGAGACGCAGCAGG
ACCAGATCCGGGCCCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCC
TCTACAGCTTCTGCCAGACCTACGCGGGGGCCTCCGTCGGCGGTGCCGTCAAGCTCAACC
ACGGTCTCGACATCGCCATCAACTGGTCAGGGGGCCTGCACCATGCTAAGAAGTGCGAGG
CCTCAGGCTTCTGCTACGTCAACGACATCGTACTCGCCATCCTCGAGCTCCTCAAGCATC
ACCAGCGAGTTCTATATGTTGATATTGATATCCACCATGGTGACGGAGTTGAGGAGGCAT
TCTATACAACAGACAGGGTTATGACGGTCTCATTCCACAAGTTTGGGGATTATTTCCCAG
GCACAGGGGATGTCCGTGATATTGGGCATTCAAAAGGAAAGTATTACTCCCTTAATGTCC
CTTTGGATGATGGGATTGATGATGAAAGCTACCAGTCCCTGTTTAAGCCTATAATGGCCA
AAGTTATGGAGGTTTTCCAGCCTGGTGCAGTTGTTCTTCAATGCGGCGCCGATTCGTTAT
CTGGGGATAGGTTGGGTTGCTTCAATCTTTCGATCAGAGGTCATGCAGAATGCGTGAAGT
ACATGAGGTCTTTCAATGTTCCATTGTTGCTTCTTGGCGGTGGTGGCTATACCATAAGAA
ATGTCGCACGTTGTTGGTGTTATGAGACTGGAGTTGCACTTGGCCAAGAGCTCGAGGATA
AGATGCCTGTCAATGAGTACTATGAATACTTTGGTCCAGATTACACTCTTCATGTAGCAC
CAAGTAACATGGAGAACAAAAATACACACTACGAACTGGATAATATAAGAAGCAAACTTC
TTGACAATCTTTCAAAACTCAGGCATGCCCCTAGCGTCCAGTTTCAAGAGCGACCTCCTG
ATACTGAGTTCCCTGAGCCGGATGAAGATGAAGAGGATCAGGATGAAAGGCATGATGGCC
CTGATTCTGACATGGAAATGGATTATCACACACCTTTGGAAGACTCAGCAAGGAGAATCA
CTATTCAAGGTGCAAGAGTTAAGAGAGAATCAGCTGGAGCTGAAACAAAAGATCAGGATG
GTAGCAGAGTAACAGGTGAACATAGAGGACCAGAACCTATGGCAGAAGACATCGGTCCAT
CTAAGCAAGCTCATCTCGATGCTAATGCCATGGCTGTCGATGAGCCGGGAAATGTCAAGA
TTGAGTCAGGAAGCTCTAGTAAGTTGCCGGACCCACCAGCCATCTACCAGAAGCCATGAT
TGTAAGCATTCGGACCGTGCGTGTGTTTTGACAGTAAAAAGACGAAGTGATGAGTGGTAG
TCTCGAGTGTCTAACCCATGTATACATGCAGCATGGATTATTAAGCTGTAATATGTATAG
TCGATTAAATGAGCCGTGAGGCAGAATTTTCTTGGCTAAAAAAAAAAAAAAAAACTTGTC
TCCCAGCTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g38470.1	519	protein\|histone deacetylase 19, putative, expressed
Brachypodium v1_2	Bradi3g08060.1	519
Arabidopsis v10	AT4G38130.1	501	\| Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 \| histone deacetylase 1 \| chr4:17896493-17899057 REVERSE LENGTH=501