barSeed - Barley Seed Development Database

Probe CUST_25211_PI390587928

Source Contig U35_15906

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25211_PI390587928	Hv_44K_v2	TTGTGTCAGTTATATTCTACCTACCAGAGATTTTTTATCACCCAACTTGCGAGGAATAAG	1971	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29110.2	4344	3e-22	3819 - 3877	98	59 / 60	plus	ABC09290
MLOC	MLOC_29110.1	6672	3e-22	4011 - 4069	98	59 / 60	plus	ABC09290 ABC10354 ABC13170 ABC13171
JLOC1	JLOC1_19422.1	4470	1e-22	3894 - 3952	98	59 / 60	plus
Harvest21	ABC50110	400	3e-25	207 - 266	100	60 / 60	minus
Harvest21	ABC09290	2231	3e-25	1943 - 2002	100	60 / 60	plus	ABC09290
Harvest35	U35_15906	2247	3e-25	1972 - 2031	100	60 / 60	plus
Harvest35	U35_46973	550	5e-23	230 - 288	98	59 / 60	minus

Contig Sequence (2247 bp)

>U35_15906 2247 Hv_44K_v2
ACACGGAACACGGTCGACATTTTCTTTATTAGCATATACTTATATTTATTCGGACAATCA
ATACAATCACGGAGCTCCCTGGACACGTCTGTGGTACACAAGTTTTACAGAAGTGGAGCA
TTACACCTCGCCTTCAGTTCACTGGCCTCAGTAAAAACTTGCGCAGAGTAAAAGGAGACC
AGACTACCAGAGGATGACACGAAAATCAGCATTCTATACCAACCACATAACCACATAGGA
ATCAAAGAACACTCGACCATGGAGGGGCAGCAGCGGCCGCTATCGAGGCTCTGAGGCAGG
GAAATGTTGGTATTGTTGAATATGCATACCAGCGGACAAAGAATTTTGACAGGCTTGCTT
TTCTTTATCTCCTAACTGGTTACTTGGACAAGGTGGGCTTTATGTCTAAGATAGCTGGGC
AGAATAACAATTTGATGGGCCAGTTCCACAATGCATTGTATCTTGGAGATGCTAAGAAAA
GAGTTGAGATCTTGGAGAATGCAGGACAGCTACCTCTAGCATATGTGACTGCTGCCACTC
ATGGGCTCACTGAAATTGCTGATAGGCTTGCTGGTGAGTTAGGTGAAGACGTGCCTTCTC
TACCTGAAGGGAAAACTAGATCACTTTTAATCCCTCCAGCACCTCTCACAGCCTGTGGTG
ATTGGCCATTGTTGAGGGTGATGCGTGGTATTTTTGAGGGTGGACTAGATGCTACTGGGA
GGGCAGAGCAGGAGGAAGATTATGATGATGCTGGTGGTGATTGGGGTGATGAAGACCTGG
AAATTGTTGATGCAAGTGCTGTGATAGAAAATGGAGATGCTGGCCATGCCGATGAAAGTG
AAACAAATGAAGAGGATGGGGAAGAGGAAGGTGGCTGGGACCTGGAAGATCTGGAATTGC
CGCCGGAGGCAGATACACCAAAAGCTACTGGTGCGGCCCGTTCTGCTTTGTTTGTGGCTC
CCACACCTGGCATGCCTGTCAGTCAAATTTGGACTCAGAAGTCATCTCTTGCTGGGGAGC
ATGCTGCAGCTGGGAATTTTGACACAGCAATGCGTCTGCTTAGCCGCCAATTGGGCATCA
AGAACTTTGCTCCTCTGAAGGCCTTGTTTCTTGATGCGCATATGGGCAGTCACACCTTTC
TGCGTGCATTTGCAAGTGCTCCAGTAATACCTGTTGCTGTTGAGAAAGGCTGGAGTGAAT
CTGCTAGTCCCAATGTGAGGGGCCCACCTGCACTTGTGTTTAGCTTCGCGCAAATGGACG
ACAAGCTGAAGGCCGCATACAAAGCCACAACCGAGGGCAAATTCCCAGAAGCACTGAGGC
AGTTCCTCAACATCCTATACACCATCCCTCTTCTCGTCGTCGACTCGCGGAGAGAGGTCG
ATGAAGTGAAGGAGCTTATCGAGATAGTGAGGGAGTACGTCCTTGGTCTCAGGATGGAAG
TCAAGAGGAAGGAGCTGAAAAACGACGCCACCCGGCAACAGGAGCTGGCTGCCTACTTCA
CCAACTGCAAGCTACAGAAGGTCCACATGCGCCTGGTCCTCACCAGCGCCATGGGCCTCT
GCTTCAAGGGCGGGAACTACGCCACCGCGGCAAACTTTGCCCGCATGCTCCTGGACAACG
GCCCGAACGAGGCCCAGGCGAAGAAGGCCCGACAGGTCCTGCAGGCCTGCGGTGACAGGA
AGGACGCCCACCAGCTGAACTACGACTTCAGAAACCCGTTCGTCGTCTGCGGGGCAACCT
TTGTCCCGATCTACCGCGGGCAGAAGGACGTCTCCTGCCCCTACTGCGCGTCCCGGTTCG
TGCCCTCAGTCGAGGGTCAGCTGTGCAGCATATGCGAGCTCTCGGTGGTCGGGGCGGACG
CCTCAGGCCTCCTCTGCTCCCCTACACAATCGAGATAAGATAAGTGGCGACGACGACTAT
TGTGGCTTCACCTCCGTGTTCATCATGTTTGTATCTCCAGTTCGAAGACTGTTGTGTCAG
TTATATTCTACCTACCAGAGATTTTTTATCACCCAACTTGCGAGGAATAAGTATAGTATA
ATTGGTTCCAAAAAAAAAAAAAAAACCCCTTTTTTTTTTGCGTCATCGATCGATCTCGGC
CTGATACGGTCGTGGTTGGTCAATCATCAACAAACGGTGTAGGATTTTTGGACAGATCCA
TATTTTTAGGGCACAATGATGATGTATTTAATCTGGATCTCATTATATGATGTTTGTGTA
TGCTTGGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g04110.2	1219	protein\|coatomer alpha subunit, putative, expressed
Brachypodium v1_2	Bradi2g55640.1	1220
Arabidopsis v10	AT2G21390.1	1218	Coatomer, alpha subunit \| chr2:9152428-9156577 FORWARD LENGTH=1218