barSeed - Barley Seed Development Database

Probe CUST_25195_PI390587928

Source Contig U35_15922

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25195_PI390587928	Hv_44K_v2	CCTACACTGTGGACGCTATGAATGCACACTTCCAATTTCCATCTACATCTCTGCAAAAAA	1828	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10622.1	2051	9e-22	1898 - 1952	100	55 / 55	plus	ABC04350
JLOC1	JLOC1_6960.1	2154	5e-22	1839 - 1893	100	55 / 55	plus
Harvest35	U35_15922	1899	3e-25	1829 - 1888	100	60 / 60	plus

Contig Sequence (1899 bp)

>U35_15922 1899 Hv_44K_v2
ATCGAGTTGCGGGAAGCAATAGCAGCCGCGGTCTGTCCAAGCAACCGCTTCCTTCACGTC
TCTCTCTTGCTCTGCTCGTCTCCTCCCTGCTCGCACCGACCGACTCCATGGATCGCACCG
ATCCCGCGCGGGGCCGCCTCGCGGTGCTCTCTTCCCACCTCCTCGCCGCCGGCGTGGAGG
GCGCGGACCCCGCGGCGGCTTCACTGGAGAGGTCGCCGGTCTCGGCCGCTTCCCCGGGGA
CCCGCGCCGGCGTGCTCGCCGTGGTGGACTCGAGGACCGGGAAAAGGTACGAGGTCAAGG
TTTCGGAGGACGGCACCGTCCGCGCCACGGACTTCAAGAAGATTACCACTGGAAAAGATG
ACAATGGTCTTAAGACTTACGATCCTGGTTATCTCAACACTGCCCCTGTGCGTTCTTCCA
TCTGCTACATTGATGGGGATGAGGGAATTCTTCGCTACAGGGGTTATCCCATTGAGGAGG
TGGCTGAAAGCAGCTCATTTGTTGAGGTCGCCTACCTCTTAATGTATGGGAATTTGCCTA
CTCAGAGTCAACTGGCAGGCTGGGAGTTTGCAATTTCACAGCACTCTGCTGTTCCTCAAG
GACTCTTGGATATCATACAATCAATGCCTCACGATGCCCACCCCATGGGTGTCCTTGCCA
GTGCAATGAGCACACTTTCTGTCTTCCACCCAGATGCAAACCCTGCTCTTAGAGGGCAAG
ATCTGTACAAATCAAAGCAAGTTAGGGATAAGCAAATTGTACGAGTTCTTGGGAAGGCAC
CAGCAATAGCAGCTGCAGCCTACCTGAGACTTGCAGGAAGGCCTGCCGTCCTTCCTTCAA
ATAATCTTTCTTATTCAGAGAATTTCTTGTATATGCTAGACTCTTTGGGTAACAAAGAAT
ATAAGCCAAATCCCCGACTTGCACGGGTTCTAGATATCCTTTTTATTCTGCATGCTGAAC
ACGAAATGAACTGCTCGACAGCTGCTGTTAGGCACCTTGCTTCAAGTGGTGTTGATGTCT
TCACTGCTCTTTCTGGTGGTGTTGGAGCTCTATATGGTCCACTGCATGGTGGCGCAAATG
AGGCGGTACTTAAAATGTTGAATGAGATTGGAGCTGTGGAGAATATTCCAGATTTCATTG
AGGGAGTGAAGAACAGGAAACGGAAAATGTCAGGTTTTGGGCACCGTGTGTATAAGAATT
ATGATCCTCGTGCTAAAGTCATCCGAAAGTTAGCAGAGGAGGTTTTCTCGATTGTCGGAC
GGGATCCTCTTATCGAGGTTGCTGTTGCTCTGGAGAAGGCAGCACTGTCAGACGATTATT
TTATCAAGAGGAAGCTGTATCCAAATGTGGATTTTTATTCTGGCCTGATATATAGAGCAA
TGGGATTCCCTACAGAATTTTTCCCCGTGTTATTTGCGATTCCTCGGATGGCTGGCTGGT
TAGCACATTGGAAGGAGTCACTTGATGACCCTGACAATAAAATCATGAGGCCGCAACAGG
TATACACGGGCGTTTGGCTGAGACATTACACCCCTGTGAGAGAACGAGTGACATCTAACC
AGGACGAGGAGCTTGGTCAGATCGCTACATCAAATGCCACGAGGCGTCGCCGTGCCGGTT
CTTCCCTGTAGAAGAACTACAGTACGCCTGGATGCATGGTGCAGCATCCAGCCCACACAA
TAAACCAAGCTGCCATCCTTGCCACTCGCGATGCCGGCTTGAGTCTGGGAGCTGTTATCC
TTCTGTTGTCAAGTATACACAGGTTATAATTTCACCAGGACAGTTGTTGGCTGTCATGTA
AAGTTTTAGTAGAAGGCACGTGTCGTTTCCTACACTGTGGACGCTATGAATGCACACTTC
CAATTTCCATCTACATCTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g13840.1	501	protein\|citrate synthase, putative, expressed
Brachypodium v1_2	Bradi3g08910.1	507
Arabidopsis v10	AT2G42790.1	509	\| Symbols: CSY3 \| citrate synthase 3 \| chr2:17803132-17805991 REVERSE LENGTH=509