barSeed - Barley Seed Development Database

Probe CUST_25194_PI390587928

Source Contig U35_15923

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25194_PI390587928	Hv_44K_v2	TGATGCTACTCATGTTGCTGTAACGCTAGCTCCTATTGAAATGAATAAGATAATTGCTGC	578	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.017	0.030	0.310	1.991	3.472	6.138
Raw	53.694	192.763	1712.703	16211.920	10208.817	19933.700

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12668.1	833	2e-24	732 - 791	100	60 / 60	plus	ABC03983
JLOC1	JLOC1_8505.1	730	8e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC03983	667	3e-25	579 - 638	100	60 / 60	plus	ABC03983
Harvest35	U35_15923	667	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_15923 667 Hv_44K_v2
CTACCTACACAGATCAATAAGTTAACCTTAAGAGACTAGCTAACCATGTCGTCCACAAAG
AGATGCATTGCCATTATCATGGTGCTACTGTTTTCTCTTCAAGCCGCAGTTGACGGTGGC
CGCCTCTTCTCCAACTCCAGGGTCACGATCGGTCCTTCTTGTCCAGTCGGCCAGTTACTG
AAATGCCGGAAGCTTTTTCCGCCAACTGGTTGTCGGTGTGTGCCGGTAAGTAATCTTGGA
CCTGTGGGCGCCCACATCCTACCCCAACACATGGTTGCCAACGGCGTCACCTGGCTTCCG
AGATATGTCCAAGATGATCAAGCGATAGCAAGCGTGAGTAAGGAGGACAACAGGATCAAC
TACCGGTGTGAGCAAGACTGTCCATCAGAGAGAATTCAGTGCAGCGAGGTTGAATGTTGT
TGTATGTGATGAGTAGCTATAGCTCGTGCATGCGTATACTAGCATATGTAGGGAATAAAG
GGCCATGCAACATGCCTCCATACACATGAAAGTGTGCACCTGATCTTTGTTGGTCTGCGT
GTCATGCATGTTGGTCGAGTTTATCAGAAGAGTGGCACTGATGCTACTCATGTTGCTGTA
ACGCTAGCTCCTATTGAAATGAATAAGATAATTGCTGCTACTAAAAAAAAAAAAAAAAAA
ATCAAAA

Homology of Contig U35_15923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None