barSeed - Barley Seed Development Database

Probe CUST_25186_PI390587928

Source Contig U35_27901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25186_PI390587928	Hv_44K_v2	GGAACGGACGCCACCTGCTGCCGCCGTCCGCGCTCTGCTTTGCGCCCACGCTCCGCGCCG	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17714.3	1784	2e-24	1163 - 1222	100	60 / 60	minus	None
MLOC	MLOC_17714.2	1835	2e-24	1213 - 1272	100	60 / 60	minus	None
JLOC1	JLOC1_12231.1	1905	8e-25	559 - 618	100	60 / 60	plus
Harvest21	ABC21999	638	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_27901	638	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_27901 638 Hv_44K_v2
GACTCCCTTAGCGACACCAACAAACCCTCGTGCGCGCCAACCGCCGGCCATGGATGACGC
GGCGTCGGCGGCGTCGGCGGCCACGACCGGAGAGCACGAGTCGGCGAGCTACCGATCCGA
AGACCGGCAGGTGCCGCCGTGGATTCCCGGCCACCGGGAGCAACAGGGAGGCCTCGACGA
CTTCATCAGCCACCTCCCCGACGACGTCCTCGGCGCCGTCGTCTCCCTCCTCCCCACCAA
GGACGGCGCGCGCACGCAGCTCCTCTCGCGCCGCTGGCGCCCCCTCTGGCTCTCGTCCGC
GGCGCCGCTCAACCTGTTGATCGACCGCCGCTTCTGCGCCGCGGGCGACGCCCGCAAGCA
CATCGCTTTCGTCTCCAGGATCCTCGCCGACCATCCCGGCCCCGCCCGCCGGTTCTCGCT
CCGCCAGGCCTTCCCGCCGGCCCAGACCGACCGCTGGCTCCGCGCCGGATCGCTCGCCCG
CCTGCAGGATCTCGAAATCGACTACACCAAAGCGCACGGGAACGGACGCCACCTGCTGCC
GCCGTCCGCGCTCTGCTTTGCGCCCACGCTCCGCGCCGNCAAATTCGGCAGCTGCGACTT
CCCCGAGTTGACCGCGCCGCCCCTGAAATTTCCGCGCC

Homology of Contig U35_27901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None