barSeed - Barley Seed Development Database

Probe CUST_25169_PI390587928

Source Contig U35_27911

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25169_PI390587928	Hv_44K_v2	CTCGACATGTTTTTGGCCCTTCTGTTTGTGACACTGCATTGTAAATTTGTAATCAAGGAA	1030	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.695	1.369	1.017	0.902	0.308	0.255
Raw	57.097	70.676	46.131	65.382	7.969	6.518

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365318	1316	2e-24	1028 - 1087	100	60 / 60	plus	ABC23292
MLOC	MLOC_51129.1	517	2e-24	83 - 142	100	60 / 60	minus	ABC23292
MLOC	MLOC_70445.1	1106	7e-23	1002 - 1061	98	59 / 60	plus	ABC23292
Harvest21	ABC23292	1127	3e-25	38 - 97	100	60 / 60	minus	ABC23292
Harvest35	U35_27911	1127	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (1127 bp)

>U35_27911 1127 Hv_44K_v2
GCCCAGCGAAAACATCCCAAGCTCCATCCCCAAATCTCGGTGCGAAGGTGAGACGCCGGT
GAGCAGATCCACAGATTCGCAGATGGCCGGTGACAAGGGCCCGTTCATCAAAATCATGGC
GGCGGTCAGCGTTCAGGATGGCCAGTCTCTGAAGCCGTGCAGCGCCAAAAGGAAGGCAGA
TGAGGCTGCTGCCGGCGACGGCGATGAGTCTCACCTGAACCTGAAGGTGCGCAGTCCCAA
AAGGAAGGCAGATGAGGCGGCGACCGGCACTACTTCCGGGGAAGAAGAAGCTGCTTCAGA
GAAGCCGTCTGCGGACGCCGTCGCAGAGTCAGAGAAGGCGTCGGCGGCGTCGGCGGCAAC
CAAAGGAGACGGGCCCGCTCCGGCGAGGAAAAAGACGCGGCTACCGCAGGAGGAGGTGGA
CCGGATCCTTGCCCGGGCGGTGGACACCAGTCAGCCCCCTCGTTTCATCGAGGCCCTGAG
GAGCAAAAATCCCAGCTTGCTGCCTTCGCCGGAGGAGGAGACGGACGCGTCCAAGGTGGC
CTTGTACGCCACCGCCCGTATGTACTACGAATCTCGACAGAGTTTCGCCGAGTACCAGGC
CTGGGTCCTTAGCCAGCTCCATGACAAGGGCTACGTCGAGGTGGACGACGAGGCCATCGC
GGTCCGGGCCAAGCTCAGAGCATACAGCGAGCAAGCGCGGAAGGAGGCGTTCTGAGACCT
CACCTGCTCCAGTTCCGACCAAGACTGATTTATTATGAATCCATAGCAAAAGCGCGGAAG
GAGGCGTTCTTTTGAGTTCCATAGCAAGTATGAATCCATGTTGTTTCTCCGGAGATTCAG
AGTTGTAGGTGCACTTCGATCTGTCTGTCTATCTGTGGTGATGTGCTTATCTAGCATACG
CTGATGAACACTCCTCTGTAATTTGTGAGGAGAAGGATGATGGGCGCCTTGCTTAATAAT
TCACCAAGTTTTGTATCCCTGATGCGGTCCTGTTCTTAGTTTCTTACCTTGCAGCAATCT
GAGTGCTTGGCTCGACATGTTTTTGGCCCTTCTGTTTGTGACACTGCATTGTAAATTTGT
AATCAAGGAAAAAAAAATAGGGCGTGCTATACAAAATAGCGGAACCC

Homology of Contig U35_27911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None