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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25164_PI390587928Hv_44K_v2ATGTGAGTGTGGAGAGACAATGGTGGAGAGATTGTGCTCTGAAAGAGTTTTCCAGTGCAA432GeneList: ivory
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1141.2141.9681.2360.7140.556
Raw 45.42676.869109.653102.32622.42918.937



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_4879.341642e-24910 - 96910060 / 60plus None
MLOCMLOC_4879.130822e-242103 - 216210060 / 60minus None
MLOCMLOC_4879.230722e-242093 - 215210060 / 60minus None
JLOC1JLOC1_3097.231558e-25942 - 100110060 / 60plus
Harvest21ABC249906363e-25433 - 49210060 / 60plus
Harvest35U35_279176363e-25433 - 49210060 / 60plus



Contig Sequence (636 bp)

>U35_27917 636 Hv_44K_v2
ACACCAGTCAGCCTCCGCCGCTCCTTCCCCCACCTGGGGCTGCCCCAAGTGCCGCGTCGC
CTACCCCAAATCCCAGACCCCCACCTCCTACCACTGCTTCTGCTCCAAGACCGAAGACCC
TCCTGCGGACCCCTGGATCCTCCCCCACTCTTGTGGCGACGTCTGCGGCCGCCGCCTGAA
TTCAAATCACGACTCCGGCTGCGAGCACACCTGCCTCCTGCTTTGCCACCCCGGACCATG
CCCTCCATGCCCGGCTGTTGTTCCTAATGCTCGGTGCTTCTGCGGGGCGCACCGTGAGCC
CCGGCGCTGTGCGCATCAGCGTTATTCTTGTAAGGGTAAATGCAATAAACGCCTTAGCTG
TGAACTCCACCGCTGTCCGGTGGATTGCCATGATGGGCCATGCCCACCGTGTGCTGTGCA
GGGGAATCACAAATGTGAGTGTGGAGAGACAATGGTGGAGAGATTGTGCTCTGAAAGAGT
TTTCCAGTGCAAGAGGGAGTGTAGTGGGATGCTGGAGTGTAGGAAGCATAGGTGTGAGAG
GGGATGCCATGGTGGAAAGTGTGGTGAATGTCCGCTTCGTGGGCGGCGGACCTGCCCTTG
TGGCAAGAAGGATTATCCAAGGTTGGAGTGTGATGT



Homology of Contig U35_27917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g06550.19103e-130protein|NF-X1-type zinc finger protein, putative, expressed
Brachypodium v1_2None
Arabidopsis v10AT5G05660.18804e-72| Symbols: ATNFXL2 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors | chr5:1691113-1695464 REVERSE LENGTH=880