barSeed - Barley Seed Development Database

Probe CUST_25161_PI390587928

Source Contig U35_26659

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25161_PI390587928	Hv_44K_v2	GCAATTCTTGGTTAGAGCAAAAGTACATATTAGCTACAAAGTGCCTGGAACTTGAATTAT	417	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13870.1	173	2e-24	12 - 71	100	60 / 60	minus	ABC21749
Harvest21	ABC21749	598	3e-25	122 - 181	100	60 / 60	minus	ABC21749
Harvest35	U35_26659	598	3e-25	418 - 477	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_26659 598 Hv_44K_v2
GGGAATTCTACGCTGTGATGTTGCCCTCACCCCCTCCCTCATGCAACTGGAACACGGGGT
CAGCGGCACCGACGACCGGAGGCAGAGGGCGGTGTGCTCGCAGAGGTACATGAGGAGAGA
TGGCTAGGGGGCGGGGAGCAAGAGGCCGGTCTCCGAGATCGATGCCGGGGTAGAAGAGGA
GTGTGGGGTCTGCATGGAGTTAAACAGCAGGGCTGTGCTGCCCAACTGCATCCACGATAT
GTGCATCAAGTGCTCCCGTCAATGGCTTCCCAGGAAATTGTCAAGACTGGGTGGACCATC
TTAGCAACTACAAGTAAATCAAGATTCTAGAGTATCTCTAGCCACATAGAGTATCTCTGG
CGACATACAAGTGTCACTTTATGAAAACATGGTTTTATTATAAATTTCAGCCAAGTTGCA
ATTCTTGGTTAGAGCAAAAGTACATATTAGCTACAAAGTGCCTGGAACTTGAATTATACT
ATTCTTACTAGACTACAACTATATTTGACAGATTAGAAATGTAATGTAGAGCATGTACAT
AATTTATTATACTTTATAAATGTTTAAGGCTTCAAGTATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None