- Probe CUST_25160_PI390587928
- Source Contig U35_38631
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25160_PI390587928 | Hv_44K_v2 | TTGTCCGTGTAATGTACTACTGTACCTAGTTTCTTGTTTAATGACGATACCCTAGCTAGT | 24 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.458 | 1.206 | 1.126 | 0.799 | 0.289 | 0.278 |
| Raw | 54398.800 | 68544.100 | 57741.800 | 61429.433 | 8231.980 | 8601.290 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360584 | 2947 | 2e-24 | 2613 - 2672 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 |
| MLOC | MLOC_75180.2 | 4477 | 2e-24 | 2222 - 2281 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 ABC24078 |
| MLOC | MLOC_75180.1 | 3172 | 2e-24 | 2222 - 2281 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 |
| MLOC | MLOC_75180.3 | 4541 | 2e-24 | 2222 - 2281 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 ABC24078 |
| JLOC1 | JLOC1_50142.3 | 2909 | 8e-25 | 2532 - 2591 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50142.2 | 3014 | 8e-25 | 2637 - 2696 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31031 | 351 | 3e-25 | 143 - 202 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00630 | 531 | 3e-25 | 21 - 80 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00568 | 329 | 3e-25 | 47 - 106 | 100 | 60 / 60 | minus | ABC00568 |
| Harvest21 | ABC00091 | 2929 | 3e-25 | 2613 - 2672 | 100 | 60 / 60 | plus | ABC00091 |
| Harvest21 | ABC00416 | 1053 | 1e-23 | 150 - 209 | 98 | 59 / 60 | minus | ABC00416 |
| Harvest21 | ABC00071 | 629 | 1e-23 | 28 - 87 | 98 | 59 / 60 | minus | ABC00071 |
| Harvest35 | U35_38631 | 644 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14103 | 2968 | 3e-25 | 2581 - 2640 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14098 | 2837 | 3e-25 | 2633 - 2692 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14093 | 767 | 3e-25 | 688 - 747 | 100 | 60 / 60 | plus |
Contig Sequence (644 bp)
>U35_38631 644 Hv_44K_v2 TTTTTTTTTTTTTTTTTAATTCCAACTAGCTAGGGTATCGTCATTAAACAAGAAACTAGG TACAGTAGTACATTACACGGACAAAACCCCCCGTATCACGATCGATGATTAATCGTCTTC CGCGCGGTAAAAATGGACGTCCCTCAAAACCATCACATTTCCAGTCCAACATTTCTTTCT AATGAAATGAAAGCTAAATGGGCGATATGAGCAACTACAGCTCGTCCTTGTCGTACTGCT CGTGTTCCGGCTCCTCCGCCTCCTGCTTGGCCGACTCCTTCTCCTCCACCTCTGGCTCCT CCACCTCCTCTTCCTCCTCCACGGCAGCGTCGGAAGCTTTGCAAGACGGTTCCTGTTTGT TGCATCTTCAATGATTCCCAGCTTGACTGATTTGCCAAACTCGTTCCAGAACTTGGCATA CTGGCCCTTCTTCTCCTCCATTGCACTCTTTTCATCATCTGTCTTTTCTTTGTTGCTGTA CTCATCAGGATCCTCCTCAGCAAGTTTGATTCCTCCTCATCAGCTGGCACTTCAACATCA ACCTCCTTGGTTGCCCACAAGTAGATGGGGAAGTTGATGAACTCAGAGTACTTCTTCACC AAGTCCTTCAGCTTTCCTTCTTCCAAGTACTCCTTAGCCTCATC
Homology of Contig U35_38631 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |