- Probe CUST_25159_PI390587928
- Source Contig U35_38633
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25159_PI390587928 | Hv_44K_v2 | GACTACAGCAGCGGCGAAACATGCGCAACCGTATTATTCATTGGTGATTGTGAGGGGAAT | 247 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.039 | 2.017 | 1.189 | 0.710 | 0.290 | 0.310 |
| Raw | 7398.123 | 11492.957 | 5892.753 | 5562.803 | 790.887 | 929.456 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_38633 | 307 | 3e-25 | 248 - 307 | 100 | 60 / 60 | plus |
Contig Sequence (307 bp)
>U35_38633 307 Hv_44K_v2 GGGTGAGCTCCTCGGTTTCTTGGTCGAGATCACAGCTGCCGGCCGAAGAAAACCGAGAGC CCGGCTGAAAGGTTACTTGGAGGACAAGGTCCTGGACAAGACAGGGATGAAGGGAACCGG GAAGTGGACGGTGCAGCAGGCCGCTGAGCTCTCCGTGGCTGCTCCTACCATTGAGGCGTC CTTGGATTCCAGGTTCCTCAGCGGGCTGAAGGACGAGAGGGTGGCTGCTTCCAAGATCTT CCAGGGTGACTACAGCAGCGGCGAAACATGCGCAACCGTATTATTCATTGGTGATTGTGA GGGGAAT
Homology of Contig U35_38633 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |