barSeed - Barley Seed Development Database

Probe CUST_25158_PI390587928

Source Contig U35_38634

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25158_PI390587928	Hv_44K_v2	GTTAAGATAATTTGTCCTGAAATACCATTAGGTGAAGGTGGATGCTGGGTTGCCGATCCC	291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370723	1972	2e-24	619 - 678	100	60 / 60	plus	None
MLOC	MLOC_58171.1	507	2e-24	117 - 176	100	60 / 60	minus	None
JLOC1	JLOC1_37767.2	522	8e-25	257 - 316	100	60 / 60	plus
Harvest35	U35_38634	378	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (378 bp)

>U35_38634 378 Hv_44K_v2
ATGGAGTGTCAGGTGGAGTATATAGACTATCCAGATGAAAGAAGGAAATGGAACAGACTC
TACAAAGTTCCTCCAAAATGTCCTAATCAGAAAGCAAGTCCGAATAGGGAGATCATGCTA
CGACCTCCTTTTCCTCAATGGTGTTGGGAGAATGATATTTCTAAGCTTGGGCTGCAAATG
GATGTTGTAGCAGTTGTAAGCAATCCTTGGAAAGTAGGTGACTTGATTGACTGGTGGTAC
ACTGATTGTTTCTGGACTGGGAAAATTATTGAGTTGTTGGACGATGACAAAGTTAAGATA
ATTTGTCCTGAAATACCATTAGGTGAAGGTGGATGCTGGGTTGCCGATCCCAACGACCTG
AGGCCAGCACTAGATTGG

Homology of Contig U35_38634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g13380.1	395	1e-60
Arabidopsis v10	None