barSeed - Barley Seed Development Database

Probe CUST_25157_PI390587928

Source Contig U35_38635

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25157_PI390587928	Hv_44K_v2	ACTCTAGTTTCTGTTACTGCTCTCTGCAATTAAATTTACCATCAATAGCCAAGAGTTCTG	19	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.956	2.798	1.158	0.914	0.324	0.327
Raw	283.083	322.460	115.972	138.970	18.519	20.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370723	1972	2e-24	1817 - 1876	100	60 / 60	plus	None
JLOC1	JLOC1_42107.2	1276	8e-25	1175 - 1234	100	60 / 60	plus
JLOC1	JLOC1_42107.1	1236	8e-25	1135 - 1194	100	60 / 60	plus
Harvest35	U35_38635	646	3e-25	20 - 79	100	60 / 60	minus

Contig Sequence (646 bp)

>U35_38635 646 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACAGAACTCTTGGCTATTGATGGTAAATTTAATTGCAGAGAG
CAGTAACAGAAACTAGAGTGTTCCTAATGTCTTAACCTGATCATGCAAGGAAAGATGATC
TTTCTTGGAGCTAACTACAATACTGGTCATGACCAGTTGCTTTTTTGAAGCCCTATCTAT
AGATCGTCGGGTATCACTACCTGTCCGAACAGGACCACTCAGCCAGGATCAGTCGGTCTG
TGCTACCACTATATATCTTCAAAGGCACTTCTAGCAACTGGAAATTCTGAACAAGACGAT
TAATTACCAGAATAAACATAACTTCAGTTACGCTTCGGCCATGGGTTATTTTCCTCAAAT
TTCCAAGGTGCCAGCGCTATGCTTGATGGAGCATAGTCAACAGACTGCAGGAGATTTTGT
GCCCGTCTGATTTTGTTTACTAGTTCCTGCAGTTTCATTGTGGTCTCGCTAACGGTGCCA
GTAGGCTTAAGTGATGCATGCTCACTTGAGGTCTTGAGTTTCTTACAACTGGGGGGACTT
GATTGCTCATTGGTAAAGAACTGAGGAGACTGTCCTGAATTGGCCATAGGAGACGTCGGA
CAGTCTGCTTGGCTGTTCATGCAACATTCACCAGTTTCATTGGGTG

Homology of Contig U35_38635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None