- Probe CUST_25156_PI390587928
- Source Contig U35_38636
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25156_PI390587928 | Hv_44K_v2 | TCTGATGCATCAGGCTACTCCAATGCAGTTGACGAGTTTAATGCTGGACTATCAGAAGCA | 202 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.047 | 1.103 | 2.046 | 1.432 | 0.353 | 0.287 |
| Raw | 27.642 | 42.880 | 71.437 | 80.827 | 6.422 | 5.447 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22044.1 | 1400 | 2e-24 | 1186 - 1245 | 100 | 60 / 60 | minus | ABC24888 |
| MLOC | MLOC_22044.2 | 1167 | 2e-24 | 957 - 1016 | 100 | 60 / 60 | minus | ABC24888 |
| MLOC | AK359708 | 1859 | 3e-21 | 1557 - 1616 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_15280.1 | 1260 | 8e-25 | 156 - 215 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38636 | 481 | 3e-25 | 203 - 262 | 100 | 60 / 60 | plus |
Contig Sequence (481 bp)
>U35_38636 481 Hv_44K_v2 GGAAGAAAGATCTGATGCATCAGACTACTACGACATGGTAGTAGATGAGTTTGATGTCCA AATGTCAGAAGAAGCTCCAGGTAGCAGCTATGGTGGTGCCATTGTCTTGGGCGAGCAGTT GAACATCCAGGATGCAGTTTCTGAAGCAAGCAGTGCTGAGTTGATTGCAGAATCAGACGG TGTTGCTGTAGTGGAAGAAGAATCTGATGCATCAGGCTACTCCAATGCAGTTGACGAGTT TAATGCTGGACTATCAGAAGCAGCTCCAGGCAGCAGCAATGGCGAAGAGATGGCATCCTC CAGTCAGGATCTGGACACCCCATCCCAACCCACTGGGCAGCGTGAACAAGATGTTGAGAG TGAAGAGCCCGAGGAGAACCACGGCAGTGGCAAGGAGGGCCAGGAGCCGCGTCTTGGTCT CAAGTCGGACTCGAGCACGTTGCCGGTCTACTTGGGCAGAATCTCAAAGCCTGCAGCAGC A
Homology of Contig U35_38636 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |