barSeed - Barley Seed Development Database

Probe CUST_25153_PI390587928

Source Contig U35_38639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25153_PI390587928	Hv_44K_v2	AGAGAAACCAACTAAAGCTCAGCGCTTGCAGCAAGATGATATTGAGATGGTAGCAGCAGA	117	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70473.1	1728	7e-23	985 - 1044	98	59 / 60	minus	None
MLOC	MLOC_70473.2	1573	7e-23	964 - 1023	98	59 / 60	minus	None
JLOC1	JLOC1_46769.1	2907	4e-23	1930 - 1989	98	59 / 60	plus
Harvest35	U35_38639	515	3e-25	118 - 177	100	60 / 60	plus

Contig Sequence (515 bp)

>U35_38639 515 Hv_44K_v2
CCTTGCTGAGAAGAGTGACAGTGAAGATGAAAGAGAGAAGCCGCGTAAGAATTTGAAGAA
GACGGATTCAGGAAAGAAGGAAGTCCCGGCTAAAGCACAGCTAGACTCTGGAAAGAAAGA
GAAACCAACTAAAGCTCAGCGCTTGCAGCAAGATGATATTGAGATGGTAGCAGCAGAGCC
AGTTCGAGCTGCAGATGACTCATCCTCATCCTCTGACGAGTCGGATGATCTAGATGAGGA
CATGGACGACGACACCAAGGCCGAAGTGCTGGCCTACGCGCACAAGATGCTGAGGAAGAA
GCAAAGGGAGCAGATACTGGACGACGCCTACAACAAGTACATGTTTGATGACGAGGGCCT
GCCTAAGTGGTTCGCCGAGGACGAGAAGAGGCACACGGTGCCCATGAAGCCGATCACGAA
GGAGGAGGTGGCGGCCATGAAGGCCCAGTTCAGGGAGATCGACGCGCGGCCGTCGAAGAA
GGTGGCGGAGGCCAAGGCGCGCAAGAAGCGTGTGG

Homology of Contig U35_38639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49230.1	820	3e-54	protein\|ribosomal RNA large subunit methyltransferase J, putative, expressed
Brachypodium v1_2	Bradi2g16130.1	848	1e-65
Arabidopsis v10	None