barSeed - Barley Seed Development Database

Probe CUST_25152_PI390587928

Source Contig U35_14680

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25152_PI390587928	Hv_44K_v2	GGACTAGTCTGTTTATGACCCCCTTTTCATGGTTATATGTTTTACTGTTTCTTGCTCTCA	874	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.237	1.238	1.120	0.886	0.433	0.389
Raw	29715.567	45606.567	36705.900	44701.300	7895.623	7730.453

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34584.1	1278	8e-25	1040 - 1099	100	60 / 60	plus
Harvest21	ABC01993	1012	3e-25	875 - 934	100	60 / 60	plus	ABC01993
Harvest35	U35_14680	1006	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (1006 bp)

>U35_14680 1006 Hv_44K_v2
CCAGTCCCCCAAATTACAACCCCTCTCGCTCGCCCGTCCGTCCCCAAATCTCTCCCCCCT
CACGAACCCCAGCCGAACCAGCAGCGGCGTCGCCGGCGATGGAGTGCGTCATCGGAGTGG
TCGGCCGCGACTTCGCGGTGGTGGCGGCGGACACGTCGGCCGTGCAGAGCATCCTCGTCC
ACAAGACGGACGAGGACAAGATCATGCTCCTCGACTCCCACAAGCTCATGGGCGCCTCCG
GCGAGCCCGGCGACCGCGTGCAGTTCACCGAGTTCATCCAGAAGAACCTCCACCTCTACC
AGTTCCGCAACAACATGCCGCTCAGCACCGCCGCCACCGCCAACTTCACCCGCGGCGAGC
TCGCCACCGCCCTCCGCAAGAATCCCTACTCTGTAAACATTATACTTGCAGGGTTTGATA
AAGATGCCGGTGCATCGATGTACTACATTGACTACATCGCGACACTCCACAAGATCGACA
AGGGAGCATTTGGGTACGGGTCGTACTTCTGTTTGTCGCTGATGGACAAGTTGTACCACC
CTGACATGACTGTCGAGGAAGCGGTAGACCTTGTTGACAAGTGCATCAAGGAGATCAGAC
TCCGGCTGGTCGTCGCGCCTCAGAATTTCGCCATCAAGATTGTGGACAAGGATGGCGCCA
GGGACTATGCTAGGCGTGAGATCGGAGGTGACAGTCCTGCAGCCGCAACCACAGCCGCAA
CAGTAGCAACAACTGCCTGAGGTGATCGGCCCTGTCGGTGGTCATTTGTCTGGCTGGAGG
CTGAACCCTTCCTGTTAATTGTTTCTGAGTACTGTCACTATGTAATCGCAATACGTTTCG
GTTTGAGAACTGTGTTGCAAATTCTCCCAGGCGTGGACTAGTCTGTTTATGACCCCCTTT
TCATGGTTATATGTTTTACTGTTTCTTGCTCTCAAAAAAAAAAAAAAAAAAGACTTTCTG
CTTATGTCTGCTGCTGCTTATTACTGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48930.1	213	1e-124	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi1g11830.1	210	2e-132
Arabidopsis v10	AT3G22630.1	204	7e-106	\| Symbols: PBD1, PRCGB \| 20S proteasome beta subunit D1 \| chr3:8009709-8010774 REVERSE LENGTH=204