barSeed - Barley Seed Development Database

Probe CUST_25151_PI390587928

Source Contig U35_14681

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25151_PI390587928	Hv_44K_v2	ATTGAATTAACCAAAGAAATACAAATGCAACGAACATCGGATGCTCAGTGCCGGGGGTAC	787	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66727.2	4387	2e-24	1275 - 1334	100	60 / 60	plus	ABC18972
MLOC	MLOC_66727.1	4388	2e-24	1275 - 1334	100	60 / 60	plus	ABC18972
JLOC1	JLOC1_44010.2	3689	8e-25	3061 - 3120	100	60 / 60	minus
JLOC1	JLOC1_44010.1	3532	8e-25	2904 - 2963	100	60 / 60	minus
Harvest35	U35_14681	850	3e-25	788 - 847	100	60 / 60	plus

Contig Sequence (850 bp)

>U35_14681 850 Hv_44K_v2
AGCAGCAGAAGGTTCAGAACCGGAAGATAGTCACTGAGATCCTCCCGGCGAAGAGGTTCT
ACAGGGCGGAAGAGTACCACCAGCAGTACCTTGCGAAGGGCGGTCGCTTTGGCTTCAAGC
AGTCCACGGAGAAGGGCTGCAACGACCCCATCCGCTGCTACGGATGAACAAGCCTGGTGA
CCTGACCTGCAAGGAAGCACACAAGCAGCAATGTTATAGTCGAGAGCGCTGCCTGAATAA
TGGTGGATGTCAGCTGAATTTCACTACAGTTTTCCTAGCTTGTGCTGGTACCTAAATGCA
AGGATTGTAAGAGAGAAGAAAGTTATTACCATTATACCTTACTAGTGTTGAATTGCCATC
GTACTTAGGATAAAGTATGGCCTCTGTAATAAAGTTTATTTTAATGTCGTAAAAATGGAT
TATAAGGACTTACGGGAATTATGTTATCAAGCGGCCGCTCAAAAAAATTGTCAAACGAGA
ACCACTATATACAACTGCTGATAGAACTAAAGAACAAACACGGCATAAAAAGAGTTTATT
TCATCCATTAATTATAACTTTCAAGAGAACAATGATGTACACAATTCAGCTTTGGCTATA
TTAGGTTAACAAAAAGAAGTTGTGCTCACAGGGAACTAAATCTACACGTTGTACCAAAGC
AATGATATCCAGAAGCCTGTGTGTCTGAAACCCACTCATAGGTTGAACCATATTCAGCTT
CGCGCGTCTTCCATTTTCCATGTGACAAACTTCTTCCAGATTGTGCAAGGCCCCAGGCAG
ATCGAACATTGAATTAACCAAAGAAATACAAATGCAACGAACATCGGATGCTCAGTGCCG
GGGGTACATA

Homology of Contig U35_14681 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None