barSeed - Barley Seed Development Database

Probe CUST_25150_PI390587928

Source Contig U35_14682

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25150_PI390587928	Hv_44K_v2	GTTGATCAGTCAGTCGAGTCTTTTTAGTTTGTACCAATCAGAAATAAATTTGGGTGGATT	557	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74875.1	892	3e-21	1 - 54	100	54 / 54	minus	ABC03185 ABC03186 ABC03187 ABC07315
JLOC1	JLOC1_49912.1	901	8e-25	142 - 201	100	60 / 60	minus
Harvest21	ABC03186	634	3e-25	547 - 606	100	60 / 60	plus	ABC03186
Harvest35	U35_14682	720	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_14682 720 Hv_44K_v2
CCACGCGTCATAAACAGTGAGTGAGTGCATCCACCTTCCATCAGCTATATCAAACATCCA
TTTGGTCATGGCAGCAACAATGCTCCCGAGGCTCGTTGCCGTGGCAGCGCTGGTCGCGCT
GATGTGCGCCGTCGCTGTGGCCCAGGTACCCGCCGCCGGTGGTGCGCCGGCGTGCGACAT
TGTTGATCAGAACGTCGTGAATGCGTGCTACAAGAGCTTCGGAGTAGGTATGCAAAATGC
CATGGCCGACAGGATTATTTCGGGTAACGTCAGTAAGGCTCCAGTTGACTGCTGTGTTGT
CTTTGGAGGCCACTCGTGCCTCTGCAAGATGAAGAAGGCGTGGAAGGCTCAAGGCAAAAA
GGCCCAGGATAATGTGCAATGCGTCAGGGAGAAGGCCTGCTAGTGAGCGCGTGCTGCAGG
TTTTTTCGTGCATGCGAGACCTCTAGTTCGTTGGATATGTTGGTTTCAATCAGTCGTTGT
CCACCTACTCCTTGTTTTCTTTTATTTGCTTCTGTGTGTGTCATGTGAGTCTGTTCAATT
TTTCTAGGTACGAAAGTGTTGATCAGTCAGTCGAGTCTTTTTAGTTTGTACCAATCAGAA
ATAAATTTGGGTGGATTTTTTTGTTTCAAAAAAAAAAAAAAAAATATTTTTTTCATGCAT
CCCAAAATACTTCCTCCTAAATATAAGTCATTTTAGAGATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None