barSeed - Barley Seed Development Database

Probe CUST_25149_PI390587928

Source Contig U35_14683

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25149_PI390587928	Hv_44K_v2	TTGCTTATGTGTGTCATCTGAGTCTGTTCTATTTTTCTATGTTGATCGGTCAGTTGAGTC	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79509.1	939	2e-24	142 - 201	100	60 / 60	minus	ABC03185 ABC03186 ABC03187 ABC07315
JLOC1	JLOC1_52954.1	883	8e-25	139 - 198	100	60 / 60	minus
Harvest21	ABC03188	644	3e-25	513 - 572	100	60 / 60	plus
Harvest21	ABC03185	676	3e-25	114 - 173	100	60 / 60	minus	ABC03185
Harvest35	U35_14683	763	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (763 bp)

>U35_14683 763 Hv_44K_v2
CCACGCGTCCGATCACGCATAAGCAGTGAGTGAGTGCATCCACCTTAGATCACCTATATC
AAACATCCATCTGGTCATGGCAGCAGCAATGCTCCCAAGGCTCGTTGCCGTGGCGGCGCT
GGTCGCGCTGATGTGCGCCGTCGCTGTGGCCCAGGTACCCGCTGCCGGTGGAGCGCCGAC
GTGCGACATTGTTGATCAGAACGTCGTGAATGCGTGCTACAAGAGCTTCGGAGTAGGTAT
GCAAAATGCCATGGCCGACAGGATTATTTCGGGTAATGTCGGTAAGGTTCCAGTTGACTG
TTGTGTTGTCTTTGGAGGCCACTCATGCCTCTGCAAGATGAAGAAGAAGTGGCAGGCTCA
AGGCAAAAAGGCCCAGGATAATGTGCAATGCGTCAGGGAGAAGGCCTGCTAGTGAGTGCG
TGCTGAAAGTCTCTTCGTCCATCCAAGACCTCTAGTTCTTTGGATACTATGTTGGTTTCA
AGTGGTCGATGTTCACCTACTCCTTGTTTGCTTTTATTTGCTTATGTGTGTCATCTGAGT
CTGTTCTATTTTTCTATGTTGATCGGTCAGTTGAGTCTTTCTAGTTTGTACCAATCAGAA
TAAATTTGGGTGGAATTTTTTGTTTCAAAAAAAAAAAAAAAAAATTTTGTTTGTATTTTT
TTCGTGCATCCTAAAATAAATTATAGTACCAGTTGTAAAAAAAAAAAAAAAAAAAAAAGA
AACAGAGAGATAAAAAAATCTACACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14683 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None