barSeed - Barley Seed Development Database

Probe CUST_25148_PI390587928

Source Contig U35_14684

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25148_PI390587928	Hv_44K_v2	TCTATTTTTCTATGTATGAGAGCGTTGATCAGTCAGTTGAGTCTTTCTAGTTTGTACCAA	542	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77031.1	865	2e-24	670 - 729	100	60 / 60	plus	ABC03185 ABC03186 ABC03187 ABC07315
JLOC1	JLOC1_51376.1	812	8e-25	665 - 724	100	60 / 60	plus
Harvest21	ABC50117	405	3e-25	65 - 124	100	60 / 60	minus
Harvest21	ABC03187	660	3e-25	549 - 608	100	60 / 60	plus	ABC03187
Harvest35	U35_14684	704	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_14684 704 Hv_44K_v2
CCACGCGTCCGGTCACGCGTCTAGTGAGTGAGTGCATCCACCTTCGATCAACTATATCAA
ACATCCATCTGGTCATGGCAGCAGCAATGCTCCCGAGGCTCGTTGTTGTGGCAGCGCTGG
TCGGGCTGATGTGCGCCGTCGCTGTGGCCCAGGTACCCGCCGCCGGTGGTGCGCCGTCGT
GCGACATTGTTGATCAGAATGTCGTGAATGCGTGCTACAAGAGCTTCGGAGTAGGTATGC
AAAATGCCATGGCCGACAGGATTATTTCGGGTAATGTCAGCAAGGTTCCAGTTGACTGTT
GTGTTGTCTTTGGAGGCCACTCGTGCCTCTGCAAGATGAAGAAGAACTGGAAGGCTCAAG
GCAAAAAGGCCCAGGATAATGTGCAATGCGTCAGGGAGAAGGCCTGCTAGTGAGTGCGTG
CTGAAAGTCTCTTCGTGCATGCAAGACCTCTAGTTCGTTGGATATGTTGGTTTCAATTTC
AAGCGGTCGATGTCACCTACTCCTTGTTTGCTTTTATTTGCTTGTTTGTCATGCGAGTAT
GTTCTATTTTTCTATGTATGAGAGCGTTGATCAGTCAGTTGAGTCTTTCTAGTTTGTACC
AATCAGAATAAATTTGGGTGGAATTTTTTGTTTCAAAAAAAAAAAAAAAAATATTTTTTC
ATGCATCCTAAAATAAATTATAGTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None