barSeed - Barley Seed Development Database

Probe CUST_25147_PI390587928

Source Contig U35_14685

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25147_PI390587928	Hv_44K_v2	GTGTCATGTGAGTGTGTTCTGTCGGTCAGTTGAGTCTTTTTAGTTTATATTTATCAGAAA	571	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.015	0.292	3.520	8.949	15.893
Raw	30.867	74.495	1443.054	27982.700	23515.533	46411.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57675.1	835	3e-22	109 - 167	98	58 / 59	minus	ABC03185 ABC03186 ABC03187 ABC07315
JLOC1	JLOC1_37412.1	732	1e-22	66 - 124	98	58 / 59	minus
Harvest21	ABC07315	641	3e-25	539 - 598	100	60 / 60	plus	ABC07315
Harvest35	U35_14685	675	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (675 bp)

>U35_14685 675 Hv_44K_v2
TCGAGCACTGTTGGCCCTGGACACCAAAACAGCACACACAAGGCATAAGCAGTGAGTGAG
TCAGTGCATCCACCTTCGATCAGCTATATTCTGCATCGATCTGGTCATGGCAGCAGCAAT
GCTCCCGAGGCTCGTTGCCGTGGCGGCACTGGTCGCGCTGATGTGCGCCGTCGCTGTGGC
CCAGGCACCTGCCGCCGGCGGTGCGCCGGTGTGTGAGGGCGTCGATCAGAACGTCGTGAA
TGCATGCTTCAAAAGCTTCGGAGAAGGTATGAAAATTGCCATTGCCGACAGGAAGCTTTC
AGAAGGAAATGTCATCAAGGTTAAAATAGACTGCTGCGTAGCCTTTGGAGGCCACTCGTG
CCTCTGCAAGATGAAGAAGGTGTGGAAGGCTCAGAGCAAAAGTGCCCAGGATAATGTGCA
ATGCGTCAGGGAGAAGGCCTGCTAGTGAGCGTGCGTGCGCGGGAGGTCTCTTCAGACCTC
TAGCTAGTTCCTTGGATATGTGTGTTTCTTGCATGTTTGTTTCAAGCGGTCGATGTCCAC
CTGCTCCTTGCTTGCTTTTATTTGCTTGTGTGTGTCATGTGAGTGTGTTCTGTCGGTCAG
TTGAGTCTTTTTAGTTTATATTTATCAGAAATAAATGTGAATGGAATTTCTTGTTTCAAA
AAAAAAAAAAAAAAA

Homology of Contig U35_14685 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None