barSeed - Barley Seed Development Database

Probe CUST_25137_PI390587928

Source Contig U35_26662

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25137_PI390587928	Hv_44K_v2	ACGAGCGCCTCCAAGGAGCTTTCCAAGACTGCCTCCGCGAGGAGGTGCTGCTGGAGGAGG	320	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.178	0.150	0.712	3.008	1.712	2.890
Raw	2.790	3.630	28.389	184.753	39.129	68.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51385.1	2042	2e-24	1518 - 1577	100	60 / 60	minus	None
JLOC1	JLOC1_32827.1	880	8e-25	356 - 415	100	60 / 60	minus
Harvest21	ABC22565	380	3e-25	321 - 380	100	60 / 60	plus
Harvest35	U35_26662	380	3e-25	321 - 380	100	60 / 60	plus

Contig Sequence (380 bp)

>U35_26662 380 Hv_44K_v2
AATCANGCACTCCTCCTCCTACCTAACAAGAGTCATGGTGGCCAACGCGGCGGCGGAGAA
AGCTGCGGCTCCNGCGAGCGGTGGCACCCGGCGGGTGCTGCTGTTCCCGCTGCCGTTCCA
AGGCCACCTCAACCCGATGCTGCAGCTGGCCGACGTGCTGCACGCCCGGGGCTTCCACAT
CACCGTCTTCCACGCCGCCTTCAATGCACCGGACCCTGTGGCGGGGTACCGCTTTGTGCC
CGTCGGCGCCGGTGTGCCGGCTGCCGACCTCGTCCCCACCGGCAGCGACGGCGACTTCGC
CGGGGCGCTGCTGCGCATCAACGAGCGCCTCCAAGGAGCTTTCCAAGACTGCCTCCGCGA
GGAGGTGCTGCTGGAGGAGG

Homology of Contig U35_26662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None