barSeed - Barley Seed Development Database

Probe CUST_25133_PI390587928

Source Contig U35_26666

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25133_PI390587928	Hv_44K_v2	ATCTCTCTAGCTAGCTAGTCGTTGGTTGTTGTTGTCGTGCGAGGAAGGAGGGAGGAGGAG	128	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361977	3058	2e-24	152 - 211	100	60 / 60	plus	ABC15338
MLOC	MLOC_33638.5	522	2e-24	126 - 185	100	60 / 60	plus	None
MLOC	MLOC_33638.3	416	2e-24	131 - 190	100	60 / 60	plus	None
MLOC	MLOC_33638.4	1061	2e-24	127 - 186	100	60 / 60	plus	None
MLOC	MLOC_33638.2	1745	2e-24	624 - 683	100	60 / 60	plus	None
MLOC	MLOC_33638.1	1781	2e-24	634 - 693	100	60 / 60	plus	None
JLOC1	JLOC1_21770.1	1577	8e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC28772	196	1e-24	120 - 178	100	59 / 59	plus
Harvest35	U35_26666	205	3e-25	129 - 188	100	60 / 60	plus

Contig Sequence (205 bp)

>U35_26666 205 Hv_44K_v2
GGAAGGTGCGCACCACCCTCGTGCCGCTGCTGCAACTAGTATAGCCCGCTCGCTCGCTCG
CTAGCAAGCTAACCCGCGAAGGACCTCTGGGGATTGATTCATGGAGTCGCTCGTCTCCGG
CTCGAGCCATCTCTCTAGCTAGCTAGTCGTTGGTTGTTGTTGTCGTGCGAGGAAGGAGGG
AGGAGGAGGAAGGGGGTGTGAGGTT

Homology of Contig U35_26666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None